Description : lumazine synthase (RibE)
Gene families : OG0004154 (Archaeplastida) Phylogenetic Tree(s): OG0004154_tree ,
OG_05_0004279 (LandPlants) Phylogenetic Tree(s): OG_05_0004279_tree ,
OG_06_0030508 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_10425797g0010 | |
Cluster | HCCA: Cluster_451 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00066p00104340 | evm_27.TU.AmTr_v1... | Coenzyme metabolism.FMN/FAD biosynthesis.lumazine synthase (RibE) | 0.03 | Archaeplastida | |
MA_156366g0010 | No alias | lumazine synthase (RibE) | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0009231 | riboflavin biosynthetic process | IEA | Interproscan |
CC | GO:0009349 | riboflavin synthase complex | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Neighborhood |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
MF | GO:0004784 | superoxide dismutase activity | IEP | Neighborhood |
MF | GO:0005048 | signal sequence binding | IEP | Neighborhood |
CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0006621 | protein retention in ER lumen | IEP | Neighborhood |
BP | GO:0006720 | isoprenoid metabolic process | IEP | Neighborhood |
BP | GO:0006801 | superoxide metabolic process | IEP | Neighborhood |
BP | GO:0008299 | isoprenoid biosynthetic process | IEP | Neighborhood |
BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
BP | GO:0008610 | lipid biosynthetic process | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
BP | GO:0018208 | peptidyl-proline modification | IEP | Neighborhood |
BP | GO:0032507 | maintenance of protein location in cell | IEP | Neighborhood |
MF | GO:0033218 | amide binding | IEP | Neighborhood |
BP | GO:0035437 | maintenance of protein localization in endoplasmic reticulum | IEP | Neighborhood |
MF | GO:0042277 | peptide binding | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
BP | GO:0044255 | cellular lipid metabolic process | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
BP | GO:0045185 | maintenance of protein location | IEP | Neighborhood |
MF | GO:0046923 | ER retention sequence binding | IEP | Neighborhood |
BP | GO:0051235 | maintenance of location | IEP | Neighborhood |
BP | GO:0051651 | maintenance of location in cell | IEP | Neighborhood |
BP | GO:0065008 | regulation of biological quality | IEP | Neighborhood |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Neighborhood |
BP | GO:0072595 | maintenance of protein localization in organelle | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002180 | LS/RS | 84 | 154 |
No external refs found! |