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  5. MA_10425804g0010

MA_10425804g0010


Description : rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana (sp|f4j8k6|rrp5_arath : 91.3)


Gene families : OG0004938 (Archaeplastida) Phylogenetic Tree(s): OG0004938_tree ,
OG_05_0033099 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0006019 (SeedPlants) Phylogenetic Tree(s): OG_06_0006019_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10425804g0010
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00137340 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
AT3G11964 No alias RNA binding;RNA binding 0.07 Archaeplastida
Cpa|evm.model.tig00000605.10 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Cre10.g428750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
GSVIVT01033430001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Gb_10495 No alias SSU processome assembly factor (RRP5) 0.06 Archaeplastida
LOC_Os07g10350.1 No alias SSU processome assembly factor (RRP5) 0.05 Archaeplastida
MA_10428306g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp1g12810.1 No alias SSU processome assembly factor (RRP5) 0.03 Archaeplastida
Pp3c4_30330V3.1 No alias RNA binding;RNA binding 0.03 Archaeplastida
Smo148115 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Solyc03g051900.4.1 No alias SSU processome assembly factor (RRP5) 0.06 Archaeplastida
Zm00001e033067_P004 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!