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  5. MA_10425878g0020

MA_10425878g0020


Description : ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana (sp|f4iae9|y1591_arath : 271.0)


Gene families : OG0001589 (Archaeplastida) Phylogenetic Tree(s): OG0001589_tree ,
OG_05_0007251 (LandPlants) Phylogenetic Tree(s): OG_05_0007251_tree ,
OG_06_0008578 (SeedPlants) Phylogenetic Tree(s): OG_06_0008578_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10425878g0020
Cluster HCCA: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00084950 evm_27.TU.AmTr_v1... ATPase family AAA domain-containing protein At1g05910... 0.03 Archaeplastida
Cre01.g038151 No alias ATPase family AAA domain-containing protein At1g05910... 0.01 Archaeplastida
GSVIVT01010750001 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 Archaeplastida
GSVIVT01014274001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 Archaeplastida
Gb_05160 No alias ATPase family AAA domain-containing protein At1g05910... 0.02 Archaeplastida
Gb_11471 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.06 Archaeplastida
LOC_Os01g47800.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os09g33980.1 No alias ATPase family AAA domain-containing protein At1g05910... 0.02 Archaeplastida
Mp1g06470.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 Archaeplastida
Mp2g00420.1 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 Archaeplastida
Pp3c23_2940V3.1 No alias cell division cycle protein 48-related / CDC48-related 0.08 Archaeplastida
Pp3c8_5410V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
Smo170139 No alias ATPase family AAA domain-containing protein At1g05910... 0.04 Archaeplastida
Solyc04g076180.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc07g062770.2.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.07 Archaeplastida
Zm00001e020208_P001 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e034695_P003 No alias ATPase family AAA domain-containing protein At1g05910... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 847 982
No external refs found!