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  5. AT5G09880

AT5G09880


Description : Splicing factor, CC1-like


Gene families : OG0003285 (Archaeplastida) Phylogenetic Tree(s): OG0003285_tree ,
OG_05_0003755 (LandPlants) Phylogenetic Tree(s): OG_05_0003755_tree ,
OG_06_0004534 (SeedPlants) Phylogenetic Tree(s): OG_06_0004534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G09880
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cre04.g213905 No alias No description available 0.02 Archaeplastida
GSVIVT01022281001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 Archaeplastida
GSVIVT01023998001 No alias No description available 0.04 Archaeplastida
Gb_11513 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10430689g0020 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc11g005170.2.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e012773_P005 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e038994_P002 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
CC GO:0000791 euchromatin IEP Neighborhood
CC GO:0000792 heterochromatin IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005720 nuclear heterochromatin IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009910 negative regulation of flower development IEP Neighborhood
BP GO:0010048 vernalization response IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035064 methylated histone binding IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0040030 regulation of molecular function, epigenetic IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045857 negative regulation of molecular function, epigenetic IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0046982 protein heterodimerization activity IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048581 negative regulation of post-embryonic development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0051093 negative regulation of developmental process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051241 negative regulation of multicellular organismal process IEP Neighborhood
BP GO:0051568 histone H3-K4 methylation IEP Neighborhood
MF GO:0070063 RNA polymerase binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140030 modification-dependent protein binding IEP Neighborhood
MF GO:0140034 methylation-dependent protein binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
BP GO:2000242 negative regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 267 338
IPR000504 RRM_dom 175 237
IPR000504 RRM_dom 459 509
IPR029123 RBM39_linker 358 452
No external refs found!