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AT5G10350


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0001318 (Archaeplastida) Phylogenetic Tree(s): OG0001318_tree ,
OG_05_0001428 (LandPlants) Phylogenetic Tree(s): OG_05_0001428_tree ,
OG_06_0001398 (SeedPlants) Phylogenetic Tree(s): OG_06_0001398_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G10350
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00165660 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.poly(A) RNA... 0.03 Archaeplastida
Pp3c22_11600V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
MF GO:0008143 poly(A) binding IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005675 transcription factor TFIIH holo complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006301 postreplication repair IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 91 159
No external refs found!