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  5. MA_10426926g0010

MA_10426926g0010


Description : cohesin cofactor (PDS5)


Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0032996 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0030398 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10426926g0010
Cluster HCCA: Cluster_437

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.02 Archaeplastida
AT1G77600 No alias ARM repeat superfamily protein 0.02 Archaeplastida
AT5G47690 No alias binding 0.07 Archaeplastida
GSVIVT01002731001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.05 Archaeplastida
GSVIVT01002824001 No alias No description available 0.04 Archaeplastida
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
Gb_12481 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
Gb_23673 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
LOC_Os06g17840.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Pp3c10_24900V3.1 No alias binding 0.05 Archaeplastida
Pp3c20_23000V3.1 No alias binding 0.02 Archaeplastida
Pp3c23_10270V3.1 No alias binding 0.08 Archaeplastida
Solyc06g065710.3.1 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
Solyc11g012770.2.1 No alias cohesin cofactor (PDS5) 0.06 Archaeplastida
Zm00001e015094_P002 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Zm00001e030989_P001 No alias cohesin cofactor (PDS5) 0.06 Archaeplastida
Zm00001e036853_P003 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!