AT5G10800

Description : RNA recognition motif (RRM)-containing protein

Gene families : OG0002273 (Archaeplastida) Phylogenetic Tree(s): OG0002273_tree ,
OG_05_0001842 (LandPlants) Phylogenetic Tree(s): OG_05_0001842_tree ,
OG_06_0005011 (SeedPlants) Phylogenetic Tree(s): OG_06_0005011_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G10800
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre03.g158150	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	None	Extended
BP	GO:0006366	transcription by RNA polymerase II	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Neighborhood
MF	GO:0004028	3-chloroallyl aldehyde dehydrogenase activity	IEP	Neighborhood
MF	GO:0004029	aldehyde dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004165	dodecenoyl-CoA delta-isomerase activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005496	steroid binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005615	extracellular space	IEP	Neighborhood
MF	GO:0008142	oxysterol binding	IEP	Neighborhood
MF	GO:0008195	phosphatidate phosphatase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
MF	GO:0008809	carnitine racemase activity	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
BP	GO:0009835	fruit ripening	IEP	Neighborhood
BP	GO:0009856	pollination	IEP	Neighborhood
BP	GO:0009914	hormone transport	IEP	Neighborhood
BP	GO:0009926	auxin polar transport	IEP	Neighborhood
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010143	cutin biosynthetic process	IEP	Neighborhood
BP	GO:0010337	regulation of salicylic acid metabolic process	IEP	Neighborhood
BP	GO:0010422	regulation of brassinosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0010541	acropetal auxin transport	IEP	Neighborhood
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0010893	positive regulation of steroid biosynthetic process	IEP	Neighborhood
BP	GO:0010942	positive regulation of cell death	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016856	racemase and epimerase activity, acting on hydroxy acids and derivatives	IEP	Neighborhood
MF	GO:0016863	intramolecular oxidoreductase activity, transposing C=C bonds	IEP	Neighborhood
BP	GO:0018904	ether metabolic process	IEP	Neighborhood
BP	GO:0019216	regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0019217	regulation of fatty acid metabolic process	IEP	Neighborhood
BP	GO:0019218	regulation of steroid metabolic process	IEP	Neighborhood
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
BP	GO:0030397	membrane disassembly	IEP	Neighborhood
MF	GO:0031210	phosphatidylcholine binding	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Neighborhood
MF	GO:0031559	oxidosqualene cyclase activity	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032352	positive regulation of hormone metabolic process	IEP	Neighborhood
MF	GO:0032934	sterol binding	IEP	Neighborhood
MF	GO:0042299	lupeol synthase activity	IEP	Neighborhood
MF	GO:0042300	beta-amyrin synthase activity	IEP	Neighborhood
BP	GO:0042304	regulation of fatty acid biosynthetic process	IEP	Neighborhood
MF	GO:0042349	guiding stereospecific synthesis activity	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0045834	positive regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0045940	positive regulation of steroid metabolic process	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046886	positive regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046889	positive regulation of lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048441	petal development	IEP	Neighborhood
BP	GO:0048443	stamen development	IEP	Neighborhood
BP	GO:0048653	anther development	IEP	Neighborhood
BP	GO:0050810	regulation of steroid biosynthetic process	IEP	Neighborhood
BP	GO:0050826	response to freezing	IEP	Neighborhood
MF	GO:0050997	quaternary ammonium group binding	IEP	Neighborhood
BP	GO:0060918	auxin transport	IEP	Neighborhood
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Neighborhood
MF	GO:0070405	ammonium ion binding	IEP	Neighborhood
BP	GO:0080140	regulation of jasmonic acid metabolic process	IEP	Neighborhood
BP	GO:0080141	regulation of jasmonic acid biosynthetic process	IEP	Neighborhood
BP	GO:0080142	regulation of salicylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0090030	regulation of steroid hormone biosynthetic process	IEP	Neighborhood
MF	GO:0090447	glycerol-3-phosphate 2-O-acyltransferase activity	IEP	Neighborhood
BP	GO:1901503	ether biosynthetic process	IEP	Neighborhood
MF	GO:1901567	fatty acid derivative binding	IEP	Neighborhood
BP	GO:1901598	(-)-pinoresinol metabolic process	IEP	Neighborhood
BP	GO:1901599	(-)-pinoresinol biosynthetic process	IEP	Neighborhood
BP	GO:1902446	regulation of shade avoidance	IEP	Neighborhood
BP	GO:1902448	positive regulation of shade avoidance	IEP	Neighborhood
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Neighborhood
MF	GO:1990136	linoleate 9S-lipoxygenase activity	IEP	Neighborhood
BP	GO:2000488	positive regulation of brassinosteroid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000061	Surp	335	386
IPR000504	RRM_dom	189	261
IPR013170	mRNA_splic_Cwf21_dom	805	844

External Links

No external refs found!

AT5G10800

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation