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  5. MA_10427258g0020

MA_10427258g0020


Description : polynucleotide phosphorylase (PNP)


Gene families : OG0001869 (Archaeplastida) Phylogenetic Tree(s): OG0001869_tree ,
OG_05_0002404 (LandPlants) Phylogenetic Tree(s): OG_05_0002404_tree ,
OG_06_0006667 (SeedPlants) Phylogenetic Tree(s): OG_06_0006667_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10427258g0020
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.03 Archaeplastida
Gb_20425 No alias polynucleotide phosphorylase (PNP) 0.05 Archaeplastida
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.03 Archaeplastida
Pp3c2_19900V3.1 No alias polyribonucleotide nucleotidyltransferase, putative 0.02 Archaeplastida
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.02 Archaeplastida
Solyc02g086600.3.1 No alias polynucleotide phosphorylase (PNP) 0.04 Archaeplastida
Zm00001e015113_P001 No alias polynucleotide phosphorylase (PNP) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 339 401
IPR001247 ExoRNase_PH_dom1 211 336
No external refs found!