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Description : component TRA1 of SAGA transcription co-activator complex
Gene families : OG0001726 (Archaeplastida) Phylogenetic Tree(s): OG0001726_tree ,
OG_05_0002263 (LandPlants) Phylogenetic Tree(s): OG_05_0002263_tree ,
OG_06_0001755 (SeedPlants) Phylogenetic Tree(s): OG_06_0001755_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10427352g0010 | |
| Cluster | HCCA: Cluster_380 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00268p00010890 | evm_27.TU.AmTr_v1... | RNA biosynthesis.RNA polymerase II-dependent... | 0.09 | Archaeplastida | |
| AMTR_s00268p00016240 | evm_27.TU.AmTr_v1... | Protein modification.phosphorylation.atypical kinase... | 0.16 | Archaeplastida | |
| AMTR_s03799p00000720 | evm_27.TU.AmTr_v1... | No description available | 0.12 | Archaeplastida | |
| AT2G17930 | No alias | Phosphatidylinositol 3- and 4-kinase family protein with... | 0.26 | Archaeplastida | |
| AT4G36080 | No alias | phosphotransferases, alcohol group as... | 0.21 | Archaeplastida | |
| Cpa|evm.model.tig00021537.68 | No alias | No description available | 0.04 | Archaeplastida | |
| Cre02.g088750 | No alias | Protein modification.phosphorylation.atypical kinase... | 0.05 | Archaeplastida | |
| GSVIVT01018783001 | No alias | Protein modification.phosphorylation.atypical kinase... | 0.24 | Archaeplastida | |
| Gb_02841 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| LOC_Os07g45064.1 | No alias | component TRA1 of SAGA transcription co-activator... | 0.08 | Archaeplastida | |
| LOC_Os07g45070.1 | No alias | component TRA1 of SAGA transcription co-activator complex | 0.15 | Archaeplastida | |
| LOC_Os07g45074.1 | No alias | no hits & (original description: none) | 0.16 | Archaeplastida | |
| MA_10432279g0010 | No alias | no hits & (original description: none) | 0.15 | Archaeplastida | |
| MA_18290g0030 | No alias | component TRA1 of SAGA transcription co-activator complex | 0.02 | Archaeplastida | |
| Mp5g23620.1 | No alias | component TRA1 of SAGA transcription co-activator... | 0.07 | Archaeplastida | |
| Pp3c17_20000V3.1 | No alias | Phosphatidylinositol 3- and 4-kinase family protein with... | 0.14 | Archaeplastida | |
| Solyc02g083780.3.1 | No alias | protein kinase (PIKK) | 0.03 | Archaeplastida | |
| Solyc02g083900.3.1 | No alias | component TRA1 of SAGA transcription co-activator... | 0.08 | Archaeplastida | |
| Zm00001e035713_P005 | No alias | component TRA1 of SAGA transcription co-activator... | 0.14 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
| MF | GO:0004519 | endonuclease activity | IEP | Neighborhood |
| MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
| MF | GO:0004525 | ribonuclease III activity | IEP | Neighborhood |
| MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006606 | protein import into nucleus | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
| BP | GO:0017038 | protein import | IEP | Neighborhood |
| MF | GO:0017069 | snRNA binding | IEP | Neighborhood |
| MF | GO:0017070 | U6 snRNA binding | IEP | Neighborhood |
| MF | GO:0030623 | U5 snRNA binding | IEP | Neighborhood |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Neighborhood |
| BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
| BP | GO:0034504 | protein localization to nucleus | IEP | Neighborhood |
| BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051170 | import into nucleus | IEP | Neighborhood |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003151 | PIK-rel_kinase_FAT | 99 | 438 |
| No external refs found! |