MA_10427420g0010

Description : Protein argonaute PNH1 OS=Oryza sativa subsp. japonica (sp|q69vd5|pnh1_orysj : 261.0)

Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0014918 (LandPlants) Phylogenetic Tree(s): OG_05_0014918_tree ,
OG_06_0019149 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10427420g0010
Cluster	HCCA: Cluster_192

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00203090	evm_27.TU.AmTr_v1...	Chromatin organisation.DNA methylation.canonical...	0.07	Archaeplastida
AMTR_s00008p00203230	evm_27.TU.AmTr_v1...	Protein argonaute 16 OS=Oryza sativa subsp. japonica	0.04	Archaeplastida
AMTR_s00122p00122810	evm_27.TU.AmTr_v1...	Chromatin organisation.DNA methylation.canonical...	0.03	Archaeplastida
AT1G31290	AGO3	ARGONAUTE 3	0.03	Archaeplastida
AT1G48410	AGO1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	0.03	Archaeplastida
AT2G27040	AGO4, OCP11	Argonaute family protein	0.04	Archaeplastida
AT5G21030	No alias	PAZ domain-containing protein / piwi domain-containing protein	0.02	Archaeplastida
AT5G43810	PNH, AGO10, ZLL	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	0.02	Archaeplastida
GSVIVT01015464001	No alias	Chromatin organisation.DNA methylation.canonical...	0.03	Archaeplastida
GSVIVT01037488001	No alias	Chromatin organisation.DNA methylation.canonical...	0.03	Archaeplastida
Gb_13708	No alias	siRNA-binding factor (AGO2) of non-canonical RdDM pathway	0.03	Archaeplastida
LOC_Os03g33650.1	No alias	Protein argonaute 7 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
LOC_Os04g47870.1	No alias	RIS-Complex miRNA recruiting factor (AGO1)	0.03	Archaeplastida
LOC_Os06g39640.1	No alias	RIS-Complex miRNA recruiting factor (AGO1)	0.02	Archaeplastida
MA_123150g0010	No alias	siRNA-binding factor (AGO2) of non-canonical RdDM pathway	0.02	Archaeplastida
MA_159389g0010	No alias	Protein argonaute 7 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_594g0010	No alias	Protein argonaute PNH1 OS=Oryza sativa subsp. japonica...	0.05	Archaeplastida
MA_85246g0010	No alias	Protein argonaute 4A OS=Oryza sativa subsp. japonica...	0.04	Archaeplastida
Mp1g23190.1	No alias	siRNA-integrating factor (AGO)	0.02	Archaeplastida
Mp6g14610.1	No alias	Protein argonaute 1A OS=Oryza sativa subsp. japonica...	0.04	Archaeplastida
Pp3c17_350V3.1	No alias	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	0.02	Archaeplastida
Pp3c18_9600V3.1	No alias	Argonaute family protein	0.04	Archaeplastida
Solyc01g008960.3.1	No alias	siRNA-integrating factor (AGO)	0.04	Archaeplastida
Solyc01g010970.3.1	No alias	Protein argonaute 7 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc06g073540.4.1	No alias	siRNA-integrating factor (AGO)	0.04	Archaeplastida
Solyc07g049500.3.1	No alias	siRNA-integrating factor (AGO)	0.02	Archaeplastida
Solyc09g082830.4.1	No alias	RIS-Complex miRNA recruiting factor (AGO1)	0.06	Archaeplastida
Zm00001e041452_P004	No alias	RIS-Complex miRNA recruiting factor (AGO1)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003165	Piwi	14	238

External Links

No external refs found!

MA_10427420g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation