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  5. MA_10427446g0010

MA_10427446g0010


Description : OTP51 plastidial RNA splicing factor


Gene families : OG0007260 (Archaeplastida) Phylogenetic Tree(s): OG0007260_tree ,
OG_05_0006849 (LandPlants) Phylogenetic Tree(s): OG_05_0006849_tree ,
OG_06_0008359 (SeedPlants) Phylogenetic Tree(s): OG_06_0008359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10427446g0010
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.02 Archaeplastida
Pp3c16_23700V3.1 No alias endonucleases 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0035658 Mon1-Ccz1 complex IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 537 563
IPR033443 PPR_long 356 475
IPR004860 LAGLIDADG_2 599 761
No external refs found!