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  5. MA_10427527g0010

MA_10427527g0010


Description : E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana (sp|q9fgi1|ltn1_arath : 410.0)


Gene families : OG0006182 (Archaeplastida) Phylogenetic Tree(s): OG0006182_tree ,
OG_05_0007511 (LandPlants) Phylogenetic Tree(s): OG_05_0007511_tree ,
OG_06_0008976 (SeedPlants) Phylogenetic Tree(s): OG_06_0008976_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10427527g0010
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00201600 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana 0.08 Archaeplastida
AT5G58410 No alias HEAT/U-box domain-containing protein 0.03 Archaeplastida
Cpa|evm.model.tig00000144.121 No alias E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os01g74610.1 No alias E3 ubiquitin ligase component LTN1 of... 0.05 Archaeplastida
MA_10269878g0010 No alias No annotation 0.03 Archaeplastida
Mp7g07340.1 No alias E3 ubiquitin ligase component LTN1 of... 0.02 Archaeplastida
Pp3c11_1040V3.1 No alias HEAT/U-box domain-containing protein 0.02 Archaeplastida
Smo437336 No alias E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana 0.06 Archaeplastida
Solyc09g055260.4.1 No alias E3 ubiquitin-protein ligase listerin OS=Arabidopsis... 0.1 Archaeplastida
Zm00001e009194_P003 No alias E3 ubiquitin ligase component LTN1 of... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!