AT5G11190 (SHN3)


Aliases : SHN3

Description : Integrase-type DNA-binding superfamily protein


Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0003909 (SeedPlants) Phylogenetic Tree(s): OG_06_0003909_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G11190
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264660 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
AMTR_s00007p00268280 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
AMTR_s00010p00240320 evm_27.TU.AmTr_v1... Ethylene-responsive transcription factor FZP OS=Oryza... 0.02 Archaeplastida
AMTR_s00016p00092590 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
AMTR_s00022p00250320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
AMTR_s00056p00064760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.06 Archaeplastida
AMTR_s00097p00165740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
AT1G12610 DDF1 Integrase-type DNA-binding superfamily protein 0.04 Archaeplastida
AT1G28160 No alias Integrase-type DNA-binding superfamily protein 0.03 Archaeplastida
AT1G44830 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
AT3G16280 No alias Integrase-type DNA-binding superfamily protein 0.05 Archaeplastida
AT5G50080 ERF110 ethylene response factor 110 0.02 Archaeplastida
AT5G52020 No alias Integrase-type DNA-binding superfamily protein 0.04 Archaeplastida
AT5G61600 ERF104 ethylene response factor 104 0.06 Archaeplastida
GSVIVT01009007001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
GSVIVT01013913001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
GSVIVT01013929001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
GSVIVT01014291001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 Archaeplastida
GSVIVT01020584001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
GSVIVT01031388001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
GSVIVT01033416001 No alias External stimuli response.biotic... 0.1 Archaeplastida
GSVIVT01035098001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
GSVIVT01035852001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.06 Archaeplastida
Gb_07475 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_16683 No alias transcription factor (ERF) 0.03 Archaeplastida
Gb_17210 No alias transcription factor (DREB). C2H2 zinc finger... 0.03 Archaeplastida
Gb_24321 No alias transcription factor (DREB) 0.02 Archaeplastida
Gb_26667 No alias transcription factor (ERF) 0.03 Archaeplastida
Gb_29220 No alias transcription factor (ERF) 0.02 Archaeplastida
Gb_29263 No alias transcription factor (DREB) 0.03 Archaeplastida
Gb_29359 No alias transcription factor (ERF). transcription factor (ERN1) 0.02 Archaeplastida
Gb_36992 No alias transcription factor (DREB) 0.02 Archaeplastida
LOC_Os01g12440.1 No alias transcription factor (ERF) 0.02 Archaeplastida
LOC_Os01g73770.1 No alias transcription factor (DREB) 0.03 Archaeplastida
LOC_Os02g10760.1 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.03 Archaeplastida
LOC_Os02g13710.1 No alias transcription factor (DREB) 0.02 Archaeplastida
LOC_Os02g32040.1 No alias transcription factor (ERF) 0.02 Archaeplastida
LOC_Os02g43940.1 No alias transcription factor (DREB) 0.03 Archaeplastida
LOC_Os02g55380.1 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os03g08500.2 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os03g64260.1 No alias transcription factor (ERF) 0.02 Archaeplastida
LOC_Os04g46440.1 No alias transcription factor (DREB) 0.03 Archaeplastida
LOC_Os04g57340.1 No alias transcription factor (ERF) 0.02 Archaeplastida
LOC_Os05g49010.1 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os06g10780.1 No alias transcription factor (DREB) 0.03 Archaeplastida
LOC_Os06g23050.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g07700.1 No alias Ethylene-responsive transcription factor ERF087... 0.03 Archaeplastida
LOC_Os08g36920.1 No alias transcription factor (ERF) 0.02 Archaeplastida
LOC_Os09g28440.1 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os10g38000.1 No alias transcription factor (DREB) 0.02 Archaeplastida
LOC_Os12g39330.1 No alias transcription factor (ERF). transcription factor (ERN1) 0.03 Archaeplastida
MA_10242823g0010 No alias transcription factor (DREB) 0.02 Archaeplastida
MA_10430231g0010 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.02 Archaeplastida
MA_10430769g0010 No alias transcription factor (DREB) 0.05 Archaeplastida
MA_10433310g0010 No alias transcription factor (DREB) 0.02 Archaeplastida
MA_10434101g0010 No alias transcription factor (DREB) 0.02 Archaeplastida
MA_135279g0010 No alias transcription factor (ERF) 0.07 Archaeplastida
MA_17001g0020 No alias transcription factor (DREB) 0.02 Archaeplastida
MA_2040g0010 No alias transcription factor (DREB) 0.04 Archaeplastida
MA_214063g0010 No alias transcription factor (DREB) 0.04 Archaeplastida
MA_411387g0010 No alias transcription factor (ERF) 0.02 Archaeplastida
MA_426919g0020 No alias transcription factor (DREB) 0.02 Archaeplastida
MA_5730259g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_5979847g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9260020g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9565555g0010 No alias Ethylene-responsive transcription factor ERF016... 0.02 Archaeplastida
Mp5g02590.1 No alias transcription factor (DREB) 0.02 Archaeplastida
Mp7g09350.1 No alias transcription factor (ERF) 0.02 Archaeplastida
Mp7g13760.1 No alias transcription factor (DREB) 0.03 Archaeplastida
Pp3c11_10660V3.1 No alias Integrase-type DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c11_23290V3.1 No alias Integrase-type DNA-binding superfamily protein 0.01 Archaeplastida
Pp3c1_5010V3.1 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c23_21450V3.1 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c25_4250V3.1 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c26_14710V3.1 No alias ethylene responsive element binding factor 1 0.01 Archaeplastida
Pp3c2_36690V3.1 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c4_2530V3.1 No alias Integrase-type DNA-binding superfamily protein 0.01 Archaeplastida
Pp3c6_19350V3.1 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c6_20480V3.1 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c6_28290V3.1 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c9_2020V3.1 No alias erf domain protein 9 0.05 Archaeplastida
Solyc01g009440.3.1 No alias transcription factor (DREB) 0.03 Archaeplastida
Solyc01g090300.2.1 No alias transcription factor (ERF) 0.04 Archaeplastida
Solyc03g005510.2.1 No alias transcription factor (ERF) 0.04 Archaeplastida
Solyc03g114440.1.1 No alias transcription factor (ERF). transcription factor (ERN1) 0.06 Archaeplastida
Solyc04g012050.3.1 No alias transcription factor (ERF) 0.04 Archaeplastida
Solyc04g071770.3.1 No alias transcription factor (ERF) 0.04 Archaeplastida
Solyc11g012980.1.1 No alias Ethylene-responsive transcription factor ERF012... 0.04 Archaeplastida
Solyc12g008350.3.1 No alias transcription factor (DREB) 0.03 Archaeplastida
Solyc12g042210.2.1 No alias transcription factor (ERF) 0.07 Archaeplastida
Zm00001e001139_P001 No alias Ethylene-responsive transcription factor ERF014... 0.05 Archaeplastida
Zm00001e014008_P002 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.02 Archaeplastida
Zm00001e014413_P001 No alias transcription factor (DREB) 0.05 Archaeplastida
Zm00001e015312_P001 No alias transcription factor (ERF) 0.03 Archaeplastida
Zm00001e015326_P001 No alias transcription factor (DREB) 0.03 Archaeplastida
Zm00001e015327_P001 No alias transcription factor (DREB) 0.05 Archaeplastida
Zm00001e015328_P001 No alias transcription factor (DREB) 0.04 Archaeplastida
Zm00001e015968_P001 No alias transcription factor (DREB) 0.04 Archaeplastida
Zm00001e023224_P001 No alias transcription factor (DREB) 0.03 Archaeplastida
Zm00001e023816_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e024669_P001 No alias transcription factor (ERF) 0.03 Archaeplastida
Zm00001e028920_P001 No alias transcription factor (ERF) 0.02 Archaeplastida
Zm00001e033072_P001 No alias transcription factor (ERF). transcription factor (ERN1) 0.02 Archaeplastida
Zm00001e034242_P001 No alias transcription factor (ERF) 0.04 Archaeplastida
Zm00001e034741_P001 No alias transcription factor (ERF). transcription factor (ERN1) 0.03 Archaeplastida
Zm00001e037404_P001 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity IDA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated ISS Interproscan
Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0001676 long-chain fatty acid metabolic process IEP Neighborhood
BP GO:0001708 cell fate specification IEP Neighborhood
BP GO:0002213 defense response to insect IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
BP GO:0009740 gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009786 regulation of asymmetric cell division IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009913 epidermal cell differentiation IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010052 guard cell differentiation IEP Neighborhood
BP GO:0010091 trichome branching IEP Neighborhood
BP GO:0010093 specification of floral organ identity IEP Neighborhood
BP GO:0010374 stomatal complex development IEP Neighborhood
BP GO:0010375 stomatal complex patterning IEP Neighborhood
BP GO:0010476 gibberellin mediated signaling pathway IEP Neighborhood
CC GO:0019897 extrinsic component of plasma membrane IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030855 epithelial cell differentiation IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032880 regulation of protein localization IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
BP GO:0045168 cell-cell signaling involved in cell fate commitment IEP Neighborhood
BP GO:0048440 carpel development IEP Neighborhood
BP GO:0048507 meristem development IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048581 negative regulation of post-embryonic development IEP Neighborhood
BP GO:0048629 trichome patterning IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051093 negative regulation of developmental process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051241 negative regulation of multicellular organismal process IEP Neighborhood
BP GO:0051302 regulation of cell division IEP Neighborhood
BP GO:0090558 plant epidermis development IEP Neighborhood
BP GO:0090627 plant epidermal cell differentiation IEP Neighborhood
BP GO:0090701 specification of plant organ identity IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000038 regulation of stomatal complex development IEP Neighborhood
BP GO:2000122 negative regulation of stomatal complex development IEP Neighborhood
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 6 55
No external refs found!