- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Polyadenylate-binding protein-interacting protein 4 OS=Arabidopsis thaliana (sp|q94am9|cid4_arath : 140.0)
Gene families : OG0003256 (Archaeplastida) Phylogenetic Tree(s): OG0003256_tree ,
OG_05_0003358 (LandPlants) Phylogenetic Tree(s): OG_05_0003358_tree ,
OG_06_0004023 (SeedPlants) Phylogenetic Tree(s): OG_06_0004023_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10427918g0010 | |
| Cluster | HCCA: Cluster_435 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G14010 | CID4 | CTC-interacting domain 4 | 0.04 | Archaeplastida | |
| Gb_00770 | No alias | Polyadenylate-binding protein-interacting protein 4... | 0.02 | Archaeplastida | |
| Gb_36727 | No alias | Polyadenylate-binding protein-interacting protein 4... | 0.02 | Archaeplastida | |
| LOC_Os02g27950.1 | No alias | Polyadenylate-binding protein-interacting protein 4... | 0.02 | Archaeplastida | |
| Pp3c2_16780V3.1 | No alias | CTC-interacting domain 4 | 0.03 | Archaeplastida | |
| Smo411870 | No alias | Polyadenylate-binding protein-interacting protein 4... | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0003917 | DNA topoisomerase type I activity | IEP | Neighborhood |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Neighborhood |
| MF | GO:0005216 | ion channel activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005534 | galactose binding | IEP | Neighborhood |
| CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
| MF | GO:0010181 | FMN binding | IEP | Neighborhood |
| BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
| MF | GO:0022838 | substrate-specific channel activity | IEP | Neighborhood |
| MF | GO:0030246 | carbohydrate binding | IEP | Neighborhood |
| MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
| MF | GO:0048029 | monosaccharide binding | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| MF | GO:1990380 | Lys48-specific deubiquitinase activity | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR025852 | SM_dom_ATX | 42 | 120 |
| No external refs found! |