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  5. MA_10428345g0020

MA_10428345g0020


Description : Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana (sp|q9m9y8|crtso_arath : 101.0)


Gene families : OG0002780 (Archaeplastida) Phylogenetic Tree(s): OG0002780_tree ,
OG_05_0003783 (LandPlants) Phylogenetic Tree(s): OG_05_0003783_tree ,
OG_06_0007541 (SeedPlants) Phylogenetic Tree(s): OG_06_0007541_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10428345g0020
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00187330 evm_27.TU.AmTr_v1... Prolycopene isomerase, chloroplastic OS=Daucus carota 0.09 Archaeplastida
AT1G57770 No alias FAD/NAD(P)-binding oxidoreductase family protein 0.03 Archaeplastida
Cpa|evm.model.tig00001258.10 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00020723.8 No alias No description available 0.03 Archaeplastida
Cre09.g407200 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.06 Archaeplastida
Cre16.g674950 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.03 Archaeplastida
GSVIVT01023233001 No alias Prolycopene isomerase, chloroplastic OS=Daucus carota 0.02 Archaeplastida
Gb_39487 No alias Prolycopene isomerase, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
Gb_39488 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os03g62510.1 No alias Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.09 Archaeplastida
Pp3c2_2830V3.1 No alias FAD/NAD(P)-binding oxidoreductase family protein 0.06 Archaeplastida
Pp3c8_1640V3.1 No alias FAD/NAD(P)-binding oxidoreductase family protein 0.06 Archaeplastida
Smo229587 No alias Prolycopene isomerase 1, chloroplastic OS=Oncidium... 0.04 Archaeplastida
Solyc05g010180.4.1 No alias Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.04 Archaeplastida
Zm00001e011669_P002 No alias Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006771 riboflavin metabolic process IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009231 riboflavin biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016854 racemase and epimerase activity IEP Neighborhood
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0042727 flavin-containing compound biosynthetic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!