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  5. MA_10428531g0010

MA_10428531g0010


Description : component CPSF30/Yth1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0002163 (Archaeplastida) Phylogenetic Tree(s): OG0002163_tree ,
OG_05_0005447 (LandPlants) Phylogenetic Tree(s): OG_05_0005447_tree ,
OG_06_0005316 (SeedPlants) Phylogenetic Tree(s): OG_06_0005316_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10428531g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00079840 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 Archaeplastida
GSVIVT01021617001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 Archaeplastida
Gb_34616 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.01 Archaeplastida
LOC_Os06g46400.1 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
MA_10432729g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_61605g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc02g070240.3.1 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.01 Archaeplastida
Solyc08g007750.4.1 No alias Zinc finger CCCH domain-containing protein 45 OS=Oryza... 0.06 Archaeplastida
Solyc08g007760.3.1 No alias Zinc finger CCCH domain-containing protein 45 OS=Oryza... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007275 YTH_domain 168 230
No external refs found!