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MA_10428589g0010


Description : DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana (sp|q9flb0|rh18_arath : 113.0)


Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0003724 (LandPlants) Phylogenetic Tree(s): OG_05_0003724_tree ,
OG_06_0004048 (SeedPlants) Phylogenetic Tree(s): OG_06_0004048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10428589g0010
Cluster HCCA: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225030 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 Archaeplastida
Cpa|evm.model.tig00000615.43 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_16157 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.03 Archaeplastida
Mp5g04780.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e027024_P001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005534 galactose binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0048029 monosaccharide binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 38 77
No external refs found!