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  5. MA_10429028g0020

MA_10429028g0020


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0076347 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10429028g0020
Cluster HCCA: Cluster_515

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Gb_26755 No alias pectate lyase 0.04 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3c2_9460V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Smo81909 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.05 Archaeplastida
Solyc02g031960.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.06 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 144 230
No external refs found!