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Description : E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana (sp|f4kcc2|prt6_arath : 100.0)
Gene families : OG0002611 (Archaeplastida) Phylogenetic Tree(s): OG0002611_tree ,
OG_05_0095203 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0076353 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10429079g0010 | |
| Cluster | HCCA: Cluster_437 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G02310 | PRT6 | proteolysis 6 | 0.12 | Archaeplastida | |
| GSVIVT01034167001 | No alias | E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana | 0.14 | Archaeplastida | |
| GSVIVT01034169001 | No alias | Protein degradation.N-end rule pathway of targeted... | 0.11 | Archaeplastida | |
| Gb_11947 | No alias | type-I-residues E3 ubiquitin ligase (PRT6) | 0.08 | Archaeplastida | |
| LOC_Os01g05500.2 | No alias | type-I-residues E3 ubiquitin ligase (PRT6) | 0.07 | Archaeplastida | |
| Mp7g16320.1 | No alias | type-I-residues E3 ubiquitin ligase (PRT6) | 0.09 | Archaeplastida | |
| Pp3c10_20380V3.1 | No alias | proteolysis 6 | 0.08 | Archaeplastida | |
| Pp3c3_24510V3.1 | No alias | proteolysis 6 | 0.02 | Archaeplastida | |
| Pp3c9_4700V3.1 | No alias | proteolysis 6 | 0.08 | Archaeplastida | |
| Smo438209 | No alias | Protein degradation.N-end rule pathway of targeted... | 0.06 | Archaeplastida | |
| Solyc09g010830.4.1 | No alias | type-I-residues E3 ubiquitin ligase (PRT6) | 0.05 | Archaeplastida | |
| Zm00001e016914_P004 | No alias | type-I-residues E3 ubiquitin ligase (PRT6) | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| MF | GO:0017069 | snRNA binding | IEP | Neighborhood |
| MF | GO:0017070 | U6 snRNA binding | IEP | Neighborhood |
| MF | GO:0030623 | U5 snRNA binding | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |