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  5. MA_10429265g0010

MA_10429265g0010


Description : component RPS18 of SSU proteome


Gene families : OG0001796 (Archaeplastida) Phylogenetic Tree(s): OG0001796_tree ,
OG_05_0001726 (LandPlants) Phylogenetic Tree(s): OG_05_0001726_tree ,
OG_06_0002411 (SeedPlants) Phylogenetic Tree(s): OG_06_0002411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10429265g0010
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00178430 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
AMTR_s00142p00099380 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
AT1G22780 RPS18A, PFL, PFL1 Ribosomal protein S13/S18 family 0.14 Archaeplastida
AT1G34030 No alias Ribosomal protein S13/S18 family 0.15 Archaeplastida
AT4G09800 RPS18C S18 ribosomal protein 0.15 Archaeplastida
Cre06.g272950 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.34 Archaeplastida
GSVIVT01017975001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
GSVIVT01034582001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
LOC_Os03g58050.1 No alias component RPS18 of SSU proteome 0.32 Archaeplastida
LOC_Os07g07709.1 No alias component RPS18 of SSU proteome 0.03 Archaeplastida
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.33 Archaeplastida
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.37 Archaeplastida
Pp3c16_2090V3.1 No alias Ribosomal protein S13/S18 family 0.31 Archaeplastida
Pp3c25_1240V3.1 No alias Ribosomal protein S13/S18 family 0.2 Archaeplastida
Pp3c25_1430V3.1 No alias Ribosomal protein S13/S18 family 0.24 Archaeplastida
Pp3c5_2800V3.1 No alias Ribosomal protein S13/S18 family 0.09 Archaeplastida
Pp3c6_21770V3.1 No alias Ribosomal protein S13/S18 family 0.32 Archaeplastida
Pp3c6_21830V3.1 No alias Ribosomal protein S13/S18 family 0.03 Archaeplastida
Smo267619 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
Solyc03g078290.3.1 No alias component RPS18 of SSU proteome 0.38 Archaeplastida
Solyc06g073370.4.1 No alias component RPS18 of SSU proteome 0.27 Archaeplastida
Solyc11g005680.2.1 No alias component RPS18 of SSU proteome 0.14 Archaeplastida
Zm00001e005967_P001 No alias component RPS18 of SSU proteome 0.37 Archaeplastida
Zm00001e011880_P001 No alias component RPS18 of SSU proteome 0.35 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!