MA_10429268g0010


Description : subunit 1 of Pol IV RNA polymerase


Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0006334 (LandPlants) Phylogenetic Tree(s): OG_05_0006334_tree ,
OG_06_0007963 (SeedPlants) Phylogenetic Tree(s): OG_06_0007963_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10429268g0010
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00153410 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G40030 DRD3, ATNRPD1B,... nuclear RNA polymerase D1B 0.04 Archaeplastida
Cpa|evm.model.tig00000241.15 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 Archaeplastida
LOC_Os04g41490.1 No alias subunit 1 of Pol III RNA polymerase 0.02 Archaeplastida
Mp6g00230.1 No alias subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0009690 cytokinin metabolic process IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0019139 cytokinin dehydrogenase activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034754 cellular hormone metabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 639 709
IPR000722 RNA_pol_asu 261 419
IPR007066 RNA_pol_Rpb1_3 424 572
No external refs found!