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  5. MA_10429667g0010

MA_10429667g0010


Description : Structural maintenance of chromosomes protein 1 OS=Arabidopsis thaliana (sp|q6q1p4|smc1_arath : 392.0)


Gene families : OG0005243 (Archaeplastida) Phylogenetic Tree(s): OG0005243_tree ,
OG_05_0006401 (LandPlants) Phylogenetic Tree(s): OG_05_0006401_tree ,
OG_06_0006812 (SeedPlants) Phylogenetic Tree(s): OG_06_0006812_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10429667g0010
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00208430 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
AT3G54670 TTN8, ATSMC1, SMC1 Structural maintenance of chromosomes (SMC) family protein 0.04 Archaeplastida
GSVIVT01028343001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.05 Archaeplastida
LOC_Os12g44390.1 No alias component SMC1/TTN8 of cohesin regulator complex 0.06 Archaeplastida
MA_15758g0010 No alias Structural maintenance of chromosomes protein 1... 0.04 Archaeplastida
MA_9699967g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Pp3c12_10030V3.1 No alias Structural maintenance of chromosomes (SMC) family protein 0.04 Archaeplastida
Solyc06g083870.3.1 No alias component SMC1/TTN8 of cohesin regulator complex 0.05 Archaeplastida
Zm00001e003843_P001 No alias component SMC1/TTN8 of cohesin regulator complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005049 nuclear export signal receptor activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 145 378
No external refs found!