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  5. MA_10429805g0030

MA_10429805g0030


Description : component RPS9 of SSU proteome


Gene families : OG0001616 (Archaeplastida) Phylogenetic Tree(s): OG0001616_tree ,
OG_05_0001469 (LandPlants) Phylogenetic Tree(s): OG_05_0001469_tree ,
OG_06_0001978 (SeedPlants) Phylogenetic Tree(s): OG_06_0001978_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10429805g0030
Cluster HCCA: Cluster_451

Target Alias Description ECC score Gene Family Method Actions
AT5G15200 No alias Ribosomal protein S4 0.18 Archaeplastida
Cpa|evm.model.tig00000826.24 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre08.g359750 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.14 Archaeplastida
GSVIVT01008028001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01011384001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.12 Archaeplastida
GSVIVT01020020001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_41315 No alias component RPS9 of SSU proteome 0.1 Archaeplastida
LOC_Os03g05980.1 No alias component RPS9 of SSU proteome 0.15 Archaeplastida
LOC_Os11g38959.1 No alias component RPS9 of SSU proteome 0.16 Archaeplastida
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.17 Archaeplastida
Mp6g10930.1 No alias component RPS9 of SSU proteome 0.16 Archaeplastida
Pp3c12_9190V3.1 No alias Ribosomal protein S4 0.11 Archaeplastida
Pp3c13_19780V3.1 No alias Ribosomal protein S4 0.11 Archaeplastida
Pp3c27_1920V3.1 No alias Ribosomal protein S4 0.03 Archaeplastida
Pp3c3_23720V3.1 No alias Ribosomal protein S4 0.13 Archaeplastida
Pp3c4_15290V3.1 No alias Ribosomal protein S4 0.12 Archaeplastida
Pp3c6_17680V3.1 No alias Ribosomal protein S4 0.08 Archaeplastida
Smo157263 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.05 Archaeplastida
Smo74302 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.11 Archaeplastida
Solyc01g010540.3.1 No alias component RPS9 of SSU proteome 0.09 Archaeplastida
Solyc01g010580.3.1 No alias component RPS9 of SSU proteome 0.08 Archaeplastida
Solyc04g005680.4.1 No alias component RPS9 of SSU proteome 0.11 Archaeplastida
Solyc05g007250.3.1 No alias component RPS9 of SSU proteome 0.15 Archaeplastida
Zm00001e010819_P002 No alias component RPS9 of SSU proteome 0.17 Archaeplastida
Zm00001e018345_P001 No alias component RPS9 of SSU proteome 0.13 Archaeplastida
Zm00001e037961_P002 No alias component RPS9 of SSU proteome 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032299 ribonuclease H2 complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 109 152
IPR001912 Ribosomal_S4/S9_N 12 64
No external refs found!