AT5G13650

Description : elongation factor family protein

Gene families : OG0001947 (Archaeplastida) Phylogenetic Tree(s): OG0001947_tree ,
OG_05_0007265 (LandPlants) Phylogenetic Tree(s): OG_05_0007265_tree ,
OG_06_0009704 (SeedPlants) Phylogenetic Tree(s): OG_06_0009704_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G13650
Cluster	HCCA: Cluster_227

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000302	response to reactive oxygen species	IMP	Interproscan
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003746	translation elongation factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	IMP	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IMP	Interproscan
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Neighborhood
CC	GO:0000815	ESCRT III complex	IEP	Neighborhood
MF	GO:0001716	L-amino-acid oxidase activity	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0004040	amidase activity	IEP	Neighborhood
MF	GO:0004630	phospholipase D activity	IEP	Neighborhood
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Neighborhood
MF	GO:0004829	threonine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005677	chromatin silencing complex	IEP	Neighborhood
CC	GO:0005798	Golgi-associated vesicle	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006338	chromatin remodeling	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006435	threonyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006465	signal peptide processing	IEP	Neighborhood
BP	GO:0006482	protein demethylation	IEP	Neighborhood
BP	GO:0006487	protein N-linked glycosylation	IEP	Neighborhood
BP	GO:0006596	polyamine biosynthetic process	IEP	Neighborhood
BP	GO:0006643	membrane lipid metabolic process	IEP	Neighborhood
BP	GO:0006986	response to unfolded protein	IEP	Neighborhood
BP	GO:0006990	positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response	IEP	Neighborhood
BP	GO:0007009	plasma membrane organization	IEP	Neighborhood
BP	GO:0007155	cell adhesion	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
MF	GO:0008143	poly(A) binding	IEP	Neighborhood
BP	GO:0008214	protein dealkylation	IEP	Neighborhood
MF	GO:0008734	L-aspartate oxidase activity	IEP	Neighborhood
MF	GO:0008792	arginine decarboxylase activity	IEP	Neighborhood
MF	GO:0008864	formyltetrahydrofolate deformylase activity	IEP	Neighborhood
BP	GO:0009266	response to temperature stimulus	IEP	Neighborhood
BP	GO:0009395	phospholipid catabolic process	IEP	Neighborhood
BP	GO:0009410	response to xenobiotic stimulus	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009435	NAD biosynthetic process	IEP	Neighborhood
BP	GO:0009445	putrescine metabolic process	IEP	Neighborhood
BP	GO:0009446	putrescine biosynthetic process	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
CC	GO:0009534	chloroplast thylakoid	IEP	Neighborhood
BP	GO:0009608	response to symbiont	IEP	Neighborhood
BP	GO:0009610	response to symbiotic fungus	IEP	Neighborhood
BP	GO:0009658	chloroplast organization	IEP	Neighborhood
BP	GO:0009668	plastid membrane organization	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009720	detection of hormone stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009726	detection of endogenous stimulus	IEP	Neighborhood
BP	GO:0009729	detection of brassinosteroid stimulus	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0009902	chloroplast relocation	IEP	Neighborhood
BP	GO:0010027	thylakoid membrane organization	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010205	photoinhibition	IEP	Neighborhood
BP	GO:0010206	photosystem II repair	IEP	Neighborhood
BP	GO:0010398	xylogalacturonan metabolic process	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
MF	GO:0015922	aspartate oxidase activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
CC	GO:0016514	SWI/SNF complex	IEP	Neighborhood
BP	GO:0016577	histone demethylation	IEP	Neighborhood
CC	GO:0016591	RNA polymerase II, holoenzyme	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Neighborhood
BP	GO:0016926	protein desumoylation	IEP	Neighborhood
BP	GO:0016999	antibiotic metabolic process	IEP	Neighborhood
BP	GO:0017000	antibiotic biosynthetic process	IEP	Neighborhood
BP	GO:0017001	antibiotic catabolic process	IEP	Neighborhood
CC	GO:0017053	transcriptional repressor complex	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
BP	GO:0019374	galactolipid metabolic process	IEP	Neighborhood
BP	GO:0019375	galactolipid biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019674	NAD metabolic process	IEP	Neighborhood
BP	GO:0019750	chloroplast localization	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0022610	biological adhesion	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0030091	protein repair	IEP	Neighborhood
CC	GO:0030133	transport vesicle	IEP	Neighborhood
CC	GO:0030135	coated vesicle	IEP	Neighborhood
CC	GO:0030136	clathrin-coated vesicle	IEP	Neighborhood
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Neighborhood
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	Neighborhood
BP	GO:0031056	regulation of histone modification	IEP	Neighborhood
BP	GO:0031058	positive regulation of histone modification	IEP	Neighborhood
BP	GO:0031060	regulation of histone methylation	IEP	Neighborhood
BP	GO:0031062	positive regulation of histone methylation	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031334	positive regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0031347	regulation of defense response	IEP	Neighborhood
BP	GO:0031399	regulation of protein modification process	IEP	Neighborhood
BP	GO:0031401	positive regulation of protein modification process	IEP	Neighborhood
MF	GO:0031490	chromatin DNA binding	IEP	Neighborhood
BP	GO:0031497	chromatin assembly	IEP	Neighborhood
BP	GO:0031507	heterochromatin assembly	IEP	Neighborhood
CC	GO:0031519	PcG protein complex	IEP	Neighborhood
CC	GO:0031976	plastid thylakoid	IEP	Neighborhood
CC	GO:0031977	thylakoid lumen	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
BP	GO:0032273	positive regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032386	regulation of intracellular transport	IEP	Neighborhood
BP	GO:0032388	positive regulation of intracellular transport	IEP	Neighborhood
MF	GO:0032451	demethylase activity	IEP	Neighborhood
MF	GO:0032452	histone demethylase activity	IEP	Neighborhood
MF	GO:0032454	histone demethylase activity (H3-K9 specific)	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032776	DNA methylation on cytosine	IEP	Neighborhood
BP	GO:0032922	circadian regulation of gene expression	IEP	Neighborhood
BP	GO:0033157	regulation of intracellular protein transport	IEP	Neighborhood
BP	GO:0033169	histone H3-K9 demethylation	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0034308	primary alcohol metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Neighborhood
MF	GO:0035064	methylated histone binding	IEP	Neighborhood
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	Neighborhood
MF	GO:0042285	xylosyltransferase activity	IEP	Neighborhood
BP	GO:0042439	ethanolamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042631	cellular response to water deprivation	IEP	Neighborhood
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	Neighborhood
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	Neighborhood
BP	GO:0042793	plastid transcription	IEP	Neighborhood
BP	GO:0043155	negative regulation of photosynthesis, light reaction	IEP	Neighborhood
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
BP	GO:0045010	actin nucleation	IEP	Neighborhood
BP	GO:0045596	negative regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	Neighborhood
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0046825	regulation of protein export from nucleus	IEP	Neighborhood
BP	GO:0046827	positive regulation of protein export from nucleus	IEP	Neighborhood
MF	GO:0047412	N-(long-chain-acyl)ethanolamine deacylase activity	IEP	Neighborhood
CC	GO:0048471	perinuclear region of cytoplasm	IEP	Neighborhood
BP	GO:0048497	maintenance of floral organ identity	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
BP	GO:0048585	negative regulation of response to stimulus	IEP	Neighborhood
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051050	positive regulation of transport	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051188	cofactor biosynthetic process	IEP	Neighborhood
BP	GO:0051222	positive regulation of protein transport	IEP	Neighborhood
BP	GO:0051223	regulation of protein transport	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051644	plastid localization	IEP	Neighborhood
BP	GO:0051656	establishment of organelle localization	IEP	Neighborhood
BP	GO:0051667	establishment of plastid localization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060341	regulation of cellular localization	IEP	Neighborhood
BP	GO:0061024	membrane organization	IEP	Neighborhood
BP	GO:0070076	histone lysine demethylation	IEP	Neighborhood
BP	GO:0070201	regulation of establishment of protein localization	IEP	Neighborhood
BP	GO:0070291	N-acylethanolamine metabolic process	IEP	Neighborhood
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Neighborhood
MF	GO:0070717	poly-purine tract binding	IEP	Neighborhood
BP	GO:0070828	heterochromatin organization	IEP	Neighborhood
BP	GO:0070887	cellular response to chemical stimulus	IEP	Neighborhood
BP	GO:0070919	production of siRNA involved in chromatin silencing by small RNA	IEP	Neighborhood
BP	GO:0070988	demethylation	IEP	Neighborhood
BP	GO:0071229	cellular response to acid chemical	IEP	Neighborhood
BP	GO:0071365	cellular response to auxin stimulus	IEP	Neighborhood
BP	GO:0071462	cellular response to water stimulus	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:0080134	regulation of response to stress	IEP	Neighborhood
BP	GO:0080188	RNA-directed DNA methylation	IEP	Neighborhood
BP	GO:0090087	regulation of peptide transport	IEP	Neighborhood
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	Neighborhood
BP	GO:0090351	seedling development	IEP	Neighborhood
CC	GO:0090568	nuclear transcriptional repressor complex	IEP	Neighborhood
BP	GO:0090700	maintenance of plant organ identity	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0140030	modification-dependent protein binding	IEP	Neighborhood
MF	GO:0140034	methylation-dependent protein binding	IEP	Neighborhood
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	Neighborhood
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	Neighborhood
BP	GO:1900150	regulation of defense response to fungus	IEP	Neighborhood
BP	GO:1901522	positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus	IEP	Neighborhood
BP	GO:1902347	response to strigolactone	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1903827	regulation of cellular protein localization	IEP	Neighborhood
BP	GO:1903829	positive regulation of cellular protein localization	IEP	Neighborhood
CC	GO:1904949	ATPase complex	IEP	Neighborhood
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	Neighborhood
BP	GO:1905156	negative regulation of photosynthesis	IEP	Neighborhood
BP	GO:1905269	positive regulation of chromatin organization	IEP	Neighborhood
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Neighborhood
BP	GO:2000034	regulation of seed maturation	IEP	Neighborhood
BP	GO:2000072	regulation of defense response to fungus, incompatible interaction	IEP	Neighborhood
BP	GO:2000693	positive regulation of seed maturation	IEP	Neighborhood
BP	GO:2001252	positive regulation of chromosome organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000795	TF_GTP-bd_dom	81	272
IPR004161	EFTu-like_2	296	365
IPR000640	EFG_V-like	473	558

External Links

No external refs found!

AT5G13650

Expression Profile

Co-expression Networks

Functional Annotation