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  5. MA_10430145g0030

MA_10430145g0030


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10430145g0030
Cluster HCCA: Cluster_541

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.08 Archaeplastida
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.07 Archaeplastida
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT1G04680 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G11920 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.03 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.04 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.02 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.02 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.03 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.03 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01007582001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Gb_02248 No alias pectate lyase 0.05 Archaeplastida
Gb_04026 No alias pectate lyase 0.03 Archaeplastida
Gb_19802 No alias pectate lyase 0.06 Archaeplastida
Gb_37157 No alias Probable pectate lyase 9 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.06 Archaeplastida
LOC_Os05g22800.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.03 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.06 Archaeplastida
MA_10437227g0020 No alias pectate lyase 0.03 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.06 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.05 Archaeplastida
MA_474372g0010 No alias pectate lyase 0.03 Archaeplastida
MA_476625g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.04 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.03 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.03 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c21_16990V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
Smo439243 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc02g080910.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc03g111690.4.1 No alias pectate lyase 0.05 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.04 Archaeplastida
Solyc05g014000.4.1 No alias pectate lyase 0.05 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.05 Archaeplastida
Solyc09g008380.3.1 No alias pectate lyase 0.04 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.04 Archaeplastida
Zm00001e008755_P002 No alias pectate lyase 0.02 Archaeplastida
Zm00001e029999_P001 No alias pectate lyase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 142 297
No external refs found!