Description : mRNA-binding regulatory factor (RBP45/47)
Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0000471 (LandPlants) Phylogenetic Tree(s): OG_05_0000471_tree ,
OG_06_0000318 (SeedPlants) Phylogenetic Tree(s): OG_06_0000318_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_10430323g0010 | |
Cluster | HCCA: Cluster_393 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00157p00079360 | evm_27.TU.AmTr_v1... | Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
AMTR_s00157p00080130 | evm_27.TU.AmTr_v1... | Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia | 0.04 | Archaeplastida | |
AT4G27000 | ATRBP45C | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Archaeplastida | |
GSVIVT01025280001 | No alias | Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana | 0.06 | Archaeplastida | |
Gb_20979 | No alias | Polyadenylate-binding protein RBP47 OS=Nicotiana... | 0.03 | Archaeplastida | |
LOC_Os04g53440.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.05 | Archaeplastida | |
Mp8g07840.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.07 | Archaeplastida | |
Solyc02g080420.4.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
Solyc10g005260.3.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.05 | Archaeplastida | |
Zm00001e000547_P001 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.04 | Archaeplastida | |
Zm00001e010479_P003 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
Zm00001e021626_P001 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
No external refs found! |