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  5. MA_10430572g0010

MA_10430572g0010


Description : component THOC2/Tho2 of mRNP trafficking THO subcomplex


Gene families : OG0003473 (Archaeplastida) Phylogenetic Tree(s): OG0003473_tree ,
OG_05_0005015 (LandPlants) Phylogenetic Tree(s): OG_05_0005015_tree ,
OG_06_0004870 (SeedPlants) Phylogenetic Tree(s): OG_06_0004870_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10430572g0010
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00044110 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.06 Archaeplastida
AT1G24706 THO2, AtTHO2 THO2 0.07 Archaeplastida
Cpa|evm.model.tig00001428.15 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 Archaeplastida
Cre12.g507700 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
GSVIVT01011619001 No alias RNA processing.messenger ribonucleoprotein particle... 0.09 Archaeplastida
Gb_33812 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.09 Archaeplastida
LOC_Os01g68810.1 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.05 Archaeplastida
MA_10184563g0010 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.03 Archaeplastida
MA_9974463g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp1g20320.1 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.07 Archaeplastida
Pp3c11_17570V3.1 No alias THO2 0.07 Archaeplastida
Smo173562 No alias RNA processing.messenger ribonucleoprotein particle... 0.09 Archaeplastida
Solyc05g017890.4.1 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.08 Archaeplastida
Zm00001e020164_P001 No alias No annotation 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR021418 THO_THOC2_C 7 309
No external refs found!