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  5. MA_10430753g0010

MA_10430753g0010


Description : pre-mRNA-processing protein (PRP40C)


Gene families : OG0007099 (Archaeplastida) Phylogenetic Tree(s): OG0007099_tree ,
OG_05_0007306 (LandPlants) Phylogenetic Tree(s): OG_05_0007306_tree ,
OG_06_0008215 (SeedPlants) Phylogenetic Tree(s): OG_06_0008215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10430753g0010
Cluster HCCA: Cluster_400

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00102340 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
AMTR_s00029p00103360 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Mp5g09830.1 No alias pre-mRNA-processing protein (PRP40C) 0.02 Archaeplastida
Pp3c11_2890V3.1 No alias pre-mRNA-processing protein 40C 0.02 Archaeplastida
Pp3c7_20890V3.1 No alias pre-mRNA-processing protein 40C 0.02 Archaeplastida
Solyc04g008700.3.1 No alias pre-mRNA-processing protein (PRP40C) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001202 WW_dom 543 569
IPR002713 FF_domain 898 943
IPR002713 FF_domain 762 808
IPR002713 FF_domain 827 875
No external refs found!