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  5. MA_10430947g0010

MA_10430947g0010


Description : PHD finger protein At3g20280 OS=Arabidopsis thaliana (sp|q5pns0|y3228_arath : 122.0)


Gene families : OG0005039 (Archaeplastida) Phylogenetic Tree(s): OG0005039_tree ,
OG_05_0002653 (LandPlants) Phylogenetic Tree(s): OG_05_0002653_tree ,
OG_06_0004160 (SeedPlants) Phylogenetic Tree(s): OG_06_0004160_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10430947g0010
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AT1G50620 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Archaeplastida
Mp3g09480.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Pp3c24_16720V3.1 No alias RING/FYVE/PHD zinc finger superfamily protein 0.05 Archaeplastida
Zm00001e023427_P001 No alias PHD finger protein At3g20280 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 622 669
No external refs found!