MA_10431157g0010


Description : Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana (sp|q9lvd3|pp434_arath : 351.0)


Gene families : OG0010059 (Archaeplastida) Phylogenetic Tree(s): OG0010059_tree ,
OG_05_0010089 (LandPlants) Phylogenetic Tree(s): OG_05_0010089_tree ,
OG_06_0021523 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10431157g0010
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Gb_05760 No alias Pentatricopeptide repeat-containing protein At5g57250,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 682 711
IPR002885 Pentatricopeptide_repeat 613 641
IPR002885 Pentatricopeptide_repeat 647 674
IPR002885 Pentatricopeptide_repeat 718 745
IPR002885 Pentatricopeptide_repeat 436 485
IPR002885 Pentatricopeptide_repeat 261 310
IPR002885 Pentatricopeptide_repeat 1008 1044
IPR002885 Pentatricopeptide_repeat 192 238
IPR002885 Pentatricopeptide_repeat 538 587
IPR002885 Pentatricopeptide_repeat 748 797
IPR002885 Pentatricopeptide_repeat 818 872
IPR002885 Pentatricopeptide_repeat 332 380
IPR002885 Pentatricopeptide_repeat 2 43
IPR002885 Pentatricopeptide_repeat 65 113
IPR002885 Pentatricopeptide_repeat 397 430
IPR002885 Pentatricopeptide_repeat 149 185
No external refs found!