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  5. MA_10431208g0010

MA_10431208g0010


Description : component THOC2/Tho2 of mRNP trafficking THO subcomplex


Gene families : OG0003473 (Archaeplastida) Phylogenetic Tree(s): OG0003473_tree ,
OG_05_0005015 (LandPlants) Phylogenetic Tree(s): OG_05_0005015_tree ,
OG_06_0004870 (SeedPlants) Phylogenetic Tree(s): OG_06_0004870_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10431208g0010
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00044110 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
AT1G24706 THO2, AtTHO2 THO2 0.05 Archaeplastida
GSVIVT01011619001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 Archaeplastida
Gb_33812 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.03 Archaeplastida
Pp3c11_17570V3.1 No alias THO2 0.04 Archaeplastida
Smo173562 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 Archaeplastida
Solyc05g017890.4.1 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.04 Archaeplastida
Zm00001e020164_P001 No alias No annotation 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR021726 THO_THOC2_N 211 249
IPR032302 THOC2_N 63 209
No external refs found!