MA_10431579g0010

Description : Polygalacturonase OS=Cryptomeria japonica (sp|p43212|pglr2_cryja : 174.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 107.9)

Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000273 (LandPlants) Phylogenetic Tree(s): OG_05_0000273_tree ,
OG_06_0000208 (SeedPlants) Phylogenetic Tree(s): OG_06_0000208_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10431579g0010
Cluster	HCCA: Cluster_265

Target	Alias	Description	ECC score	Gene Family Method
AT1G02460	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT1G05660	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT2G41850	ADPG2, PGAZAT	polygalacturonase abscission zone A. thaliana	0.03	Archaeplastida
AT2G43890	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G57510	ADPG1	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT4G01890	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G14650	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
GSVIVT01008062001	No alias	Polygalacturonase OS=Juniperus ashei	0.02	Archaeplastida
GSVIVT01032118001	No alias	Cell wall.pectin.modification and...	0.02	Archaeplastida
GSVIVT01032447001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana	0.02	Archaeplastida
LOC_Os01g19170.1	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os03g59330.1	No alias	polygalacturonase (QRT2)	0.03	Archaeplastida
Solyc01g087280.2.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc05g005040.4.1	No alias	polygalacturonase (PGX1)	0.03	Archaeplastida
Solyc07g015870.4.1	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Solyc10g080210.2.1	No alias	polygalacturonase (QRT2)	0.02	Archaeplastida
Solyc12g009420.3.1	No alias	Polygalacturonase QRT2 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc12g019220.1.1	No alias	Polygalacturonase OS=Prunus persica...	0.04	Archaeplastida
Solyc12g096730.3.1	No alias	Polygalacturonase OS=Prunus persica...	0.02	Archaeplastida
Zm00001e026240_P001	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Zm00001e032294_P001	No alias	Probable polygalacturonase At1g80170 OS=Arabidopsis...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Neighborhood
MF	GO:0000976	transcription regulatory region sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0001012	RNA polymerase II regulatory region DNA binding	IEP	Neighborhood
MF	GO:0001067	regulatory region nucleic acid binding	IEP	Neighborhood
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Neighborhood
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Neighborhood
BP	GO:0015931	nucleobase-containing compound transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
MF	GO:0032422	purine-rich negative regulatory element binding	IEP	Neighborhood
MF	GO:0044212	transcription regulatory region DNA binding	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
BP	GO:1901264	carbohydrate derivative transport	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	213	347

External Links

No external refs found!

MA_10431579g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation