1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_10431686g0010

MA_10431686g0010


Description : homologous recombination repair exonuclease (EXO1)


Gene families : OG0003315 (Archaeplastida) Phylogenetic Tree(s): OG0003315_tree ,
OG_05_0003232 (LandPlants) Phylogenetic Tree(s): OG_05_0003232_tree ,
OG_06_0011254 (SeedPlants) Phylogenetic Tree(s): OG_06_0011254_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10431686g0010
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00265020 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.1 Archaeplastida
Cpa|evm.model.tig00000403.40 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 Archaeplastida
GSVIVT01008397001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.13 Archaeplastida
GSVIVT01021316001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.15 Archaeplastida
Gb_08129 No alias homologous recombination repair exonuclease (EXO1) 0.01 Archaeplastida
Gb_14686 No alias homologous recombination repair exonuclease (EXO1) 0.12 Archaeplastida
Pp3c23_8000V3.1 No alias 5\-3\ exonuclease family protein 0.04 Archaeplastida
Solyc02g071530.2.1 No alias homologous recombination repair exonuclease (EXO1) 0.08 Archaeplastida
Solyc03g119070.2.1 No alias homologous recombination repair exonuclease (EXO1) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006085 XPG_DNA_repair_N 1 102
IPR006086 XPG-I_dom 144 235
No external refs found!