Description : RNA editing factor (POCO)
Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0001224 (LandPlants) Phylogenetic Tree(s): OG_05_0001224_tree ,
OG_06_0002515 (SeedPlants) Phylogenetic Tree(s): OG_06_0002515_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_10431989g0010 | |
Cluster | HCCA: Cluster_388 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G15590 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
AT4G01990 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT4G02820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
GSVIVT01020533001 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.05 | Archaeplastida | |
GSVIVT01031246001 | No alias | Pentatricopeptide repeat-containing protein At4g01990,... | 0.02 | Archaeplastida | |
Gb_09452 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.05 | Archaeplastida | |
Gb_14211 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
LOC_Os02g55310.1 | No alias | Pentatricopeptide repeat-containing protein At5g27460... | 0.02 | Archaeplastida | |
LOC_Os07g40750.1 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.03 | Archaeplastida | |
LOC_Os10g35730.1 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.02 | Archaeplastida | |
LOC_Os10g35760.2 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.02 | Archaeplastida | |
LOC_Os12g34340.1 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | Archaeplastida | |
MA_100637g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
MA_10435629g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
MA_492314g0010 | No alias | RNA editing factor (POCO) | 0.03 | Archaeplastida | |
MA_77400g0010 | No alias | Pentatricopeptide repeat-containing protein At1g15480,... | 0.03 | Archaeplastida | |
MA_87771g0010 | No alias | Pentatricopeptide repeat-containing protein At1g02150... | 0.03 | Archaeplastida | |
MA_94340g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
Pp3c21_11730V3.1 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.02 | Archaeplastida | |
Solyc01g079320.4.1 | No alias | Pentatricopeptide repeat-containing protein At1g02370,... | 0.04 | Archaeplastida | |
Solyc02g078330.3.1 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.02 | Archaeplastida | |
Solyc06g071900.3.1 | No alias | Pentatricopeptide repeat-containing protein At1g07590,... | 0.02 | Archaeplastida | |
Solyc07g054090.3.1 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.02 | Archaeplastida | |
Zm00001e012594_P001 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.04 | Archaeplastida | |
Zm00001e036620_P001 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.02 | Archaeplastida | |
Zm00001e039746_P002 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Neighborhood |
MF | GO:0004619 | phosphoglycerate mutase activity | IEP | Neighborhood |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
MF | GO:0015035 | protein disulfide oxidoreductase activity | IEP | Neighborhood |
MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Neighborhood |
MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Neighborhood |
MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Neighborhood |
MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Neighborhood |
MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | Neighborhood |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
CC | GO:0035658 | Mon1-Ccz1 complex | IEP | Neighborhood |
BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
CC | GO:0044433 | cytoplasmic vesicle part | IEP | Neighborhood |
CC | GO:0044440 | endosomal part | IEP | Neighborhood |
MF | GO:0046537 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
No external refs found! |