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  5. MA_10432022g0010

MA_10432022g0010


Description : Structural maintenance of chromosomes protein 5 OS=Arabidopsis thaliana (sp|q9lfs8|smc5_arath : 328.0)


Gene families : OG0003586 (Archaeplastida) Phylogenetic Tree(s): OG0003586_tree ,
OG_05_0007645 (LandPlants) Phylogenetic Tree(s): OG_05_0007645_tree ,
OG_06_0008301 (SeedPlants) Phylogenetic Tree(s): OG_06_0008301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10432022g0010
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00247730 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.03 Archaeplastida
AT5G15920 SMC5 structural maintenance of chromosomes 5 0.06 Archaeplastida
Cre10.g440300 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 Archaeplastida
GSVIVT01032195001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.05 Archaeplastida
Gb_33241 No alias component SMC5 of homologous recombination repair... 0.03 Archaeplastida
LOC_Os05g51790.1 No alias component SMC5 of homologous recombination repair... 0.03 Archaeplastida
MA_366572g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c24_4940V3.1 No alias structural maintenance of chromosomes 5 0.03 Archaeplastida
Smo174036 No alias DNA damage response.DNA repair mechanisms.homologous... 0.03 Archaeplastida
Solyc01g087720.4.1 No alias component SMC5 of homologous recombination repair... 0.03 Archaeplastida
Zm00001e013059_P001 No alias component SMC5 of homologous recombination repair... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!