MA_10432431g0010

Description : component SF3A1 of splicing factor 3A complex

Gene families : OG0003158 (Archaeplastida) Phylogenetic Tree(s): OG0003158_tree ,
OG_05_0003043 (LandPlants) Phylogenetic Tree(s): OG_05_0003043_tree ,
OG_06_0004939 (SeedPlants) Phylogenetic Tree(s): OG_06_0004939_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10432431g0010
Cluster	HCCA: Cluster_503

Target	Alias	Description	ECC score	Gene Family Method
Cre06.g307450	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	Archaeplastida
GSVIVT01012058001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.05	Archaeplastida
Gb_03741	No alias	component SF3A1 of splicing factor 3A complex	0.05	Archaeplastida
Gb_32888	No alias	component SF3A1 of splicing factor 3A complex	0.03	Archaeplastida
LOC_Os02g14780.2	No alias	component SF3A1 of splicing factor 3A complex	0.04	Archaeplastida
Pp3c18_11660V3.1	No alias	SWAP (Suppressor-of-White-APricot)/surp...	0.02	Archaeplastida
Smo146605	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.06	Archaeplastida
Solyc02g081960.3.1	No alias	component SF3A1 of splicing factor 3A complex	0.03	Archaeplastida
Solyc04g005690.4.1	No alias	component SF3A1 of splicing factor 3A complex	0.06	Archaeplastida
Zm00001e017307_P001	No alias	component SF3A1 of splicing factor 3A complex	0.02	Archaeplastida
Zm00001e025538_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005681	spliceosomal complex	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
BP	GO:0016255	attachment of GPI anchor to protein	IEP	Neighborhood
BP	GO:0016482	cytosolic transport	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
CC	GO:0030906	retromer, cargo-selective complex	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Neighborhood
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR022030	SF3A1	297	512
IPR000626	Ubiquitin_dom	774	839
IPR000061	Surp	101	152
IPR000061	Surp	227	278

External Links

No external refs found!

MA_10432431g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation