1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G16420

AT5G16420


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G16420
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00134p00027990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.02 Archaeplastida
Gb_38400 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 Archaeplastida
Mp1g21650.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000182 rDNA binding IEP Neighborhood
BP GO:0000373 Group II intron splicing IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0004300 enoyl-CoA hydratase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004564 beta-fructofuranosidase activity IEP Neighborhood
MF GO:0004575 sucrose alpha-glucosidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005987 sucrose catabolic process IEP Neighborhood
MF GO:0008419 RNA lariat debranching enzyme activity IEP Neighborhood
BP GO:0009313 oligosaccharide catabolic process IEP Neighborhood
MF GO:0015926 glucosidase activity IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0044275 cellular carbohydrate catabolic process IEP Neighborhood
BP GO:0046352 disaccharide catabolic process IEP Neighborhood
MF GO:0090599 alpha-glucosidase activity IEP Neighborhood
BP GO:0097031 obsolete mitochondrial respiratory chain complex I biogenesis IEP Neighborhood
BP GO:0097034 obsolete mitochondrial respiratory chain complex IV biogenesis IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 398 447
IPR002885 Pentatricopeptide_repeat 224 273
IPR002885 Pentatricopeptide_repeat 291 322
IPR002885 Pentatricopeptide_repeat 361 391
IPR002885 Pentatricopeptide_repeat 186 216
No external refs found!