MA_10432981g0010

Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana (sp|q84tg3|pub23_arath : 139.0)

Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10432981g0010
Cluster	HCCA: Cluster_467

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00223570	evm_27.TU.AmTr_v1...	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00030p00130440	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00030p00159240	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT1G66160	CMPG1, ATCMPG1	CYS, MET, PRO, and GLY protein 1	0.02	Archaeplastida
AT2G35930	PUB23	plant U-box 23	0.03	Archaeplastida
AT3G11840	PUB24	plant U-box 24	0.03	Archaeplastida
AT3G52450	PUB22	plant U-box 22	0.03	Archaeplastida
AT5G37490	No alias	ARM repeat superfamily protein	0.02	Archaeplastida
GSVIVT01011139001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01011140001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01011616001	No alias	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01026542001	No alias	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.09	Archaeplastida
GSVIVT01031720001	No alias	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_02490	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Gb_02633	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_16228	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_17119	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	Archaeplastida
Gb_19502	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
Gb_26429	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_29851	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Gb_29938	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
LOC_Os01g64570.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g34410.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os03g13740.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os04g34140.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
LOC_Os04g49970.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
LOC_Os04g58920.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os06g13870.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os10g03440.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.02	Archaeplastida
MA_10425865g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
MA_10433846g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
MA_1663g0020	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.06	Archaeplastida
MA_17715g0010	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.05	Archaeplastida
MA_3784951g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_5536318g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_58844g0020	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_84154g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
Mp3g22740.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Mp7g11000.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007010.2.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007020.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007030.3.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007040.4.1	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007050.3.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g107980.3.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Solyc04g071030.1.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Solyc05g056500.1.1	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.04	Archaeplastida
Solyc11g068920.1.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc11g068940.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e008167_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e014752_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e014779_P001	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e015763_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e022679_P001	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e039417_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0004478	methionine adenosyltransferase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	Neighborhood
BP	GO:0006732	coenzyme metabolic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0009108	coenzyme biosynthetic process	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051188	cofactor biosynthetic process	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	117	189

External Links

No external refs found!

MA_10432981g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation