MA_10433660g0010


Description : mRNA-binding regulatory factor (RBP45/47)


Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0011791 (LandPlants) Phylogenetic Tree(s): OG_05_0011791_tree ,
OG_06_0013864 (SeedPlants) Phylogenetic Tree(s): OG_06_0013864_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10433660g0010
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00161920 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre16.g652900 No alias Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01037634001 No alias Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia 0.02 Archaeplastida
GSVIVT01037635001 No alias Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_06023 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 Archaeplastida
Gb_20978 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Gb_20979 No alias Polyadenylate-binding protein RBP47 OS=Nicotiana... 0.02 Archaeplastida
Gb_24595 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
LOC_Os03g07800.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
LOC_Os07g33330.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
MA_108444g0010 No alias Polyadenylate-binding protein RBP45 OS=Nicotiana... 0.02 Archaeplastida
Pp3c12_10910V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c12_10960V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c4_13300V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Smo80061 No alias Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.03 Archaeplastida
Solyc03g031720.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.06 Archaeplastida
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 Archaeplastida
Solyc10g050860.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
Zm00001e000547_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Zm00001e006878_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e010479_P003 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 Archaeplastida
Zm00001e021626_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 145 214
IPR000504 RRM_dom 51 118
No external refs found!