MA_10433849g0010

Description : pre-mRNA splicing factor (PHF5)

Gene families : OG0005494 (Archaeplastida) Phylogenetic Tree(s): OG0005494_tree ,
OG_05_0005271 (LandPlants) Phylogenetic Tree(s): OG_05_0005271_tree ,
OG_06_0005207 (SeedPlants) Phylogenetic Tree(s): OG_06_0005207_treeExport Image

Sequence : coding (download), protein (download)

Expression Profile

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Co-expression Networks

Type Description Actions

Neighborhood HRR: MA_10433849g0010

Cluster HCCA: Cluster_268

Expression Context Conservation (ECC)

Target Alias Description ECC score Gene Family Method Actions

AT1G07170 No alias PHF5-like protein 0.02 Archaeplastida

Cpa|evm.model.tig00001187.3 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida

Cre05.g234648 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida

LOC_Os04g56760.1 No alias pre-mRNA splicing factor (PHF5) 0.03 Archaeplastida

LOC_Os05g30410.1 No alias pre-mRNA splicing factor (PHF5) 0.02 Archaeplastida

Mp8g14050.1 No alias pre-mRNA splicing factor (PHF5) 0.02 Archaeplastida

Functional Annotation

GO

Predicted GO

InterPro

Type GO Term Name Evidence Source

BP GO:0000375 RNA splicing, via transesterification reactions None Extended

BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile None Extended

BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan

BP GO:0006139 nucleobase-containing compound metabolic process None Extended

BP GO:0006396 RNA processing None Extended

BP GO:0006397 mRNA processing None Extended

BP GO:0006725 cellular aromatic compound metabolic process None Extended

BP GO:0006807 nitrogen compound metabolic process None Extended

BP GO:0008150 biological_process None Extended

BP GO:0008152 metabolic process None Extended

BP GO:0008380 RNA splicing None Extended

BP GO:0009987 cellular process None Extended

BP GO:0016070 RNA metabolic process None Extended

BP GO:0016071 mRNA metabolic process None Extended

BP GO:0034641 cellular nitrogen compound metabolic process None Extended

BP GO:0043170 macromolecule metabolic process None Extended

BP GO:0044237 cellular metabolic process None Extended

BP GO:0044238 primary metabolic process None Extended

BP GO:0046483 heterocycle metabolic process None Extended

BP GO:0071704 organic substance metabolic process None Extended

BP GO:0090304 nucleic acid metabolic process None Extended

BP GO:1901360 organic cyclic compound metabolic process None Extended

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Type GO Term Name Evidence Source

MF GO:0000030 mannosyltransferase activity IEP Neighborhood

BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood

MF GO:0003735 structural constituent of ribosome IEP Neighborhood

MF GO:0004175 endopeptidase activity IEP Neighborhood

MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood

MF GO:0004376 glycolipid mannosyltransferase activity IEP Neighborhood

MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood

MF GO:0005198 structural molecule activity IEP Neighborhood

CC GO:0005575 cellular_component IEP Neighborhood

CC GO:0005839 proteasome core complex IEP Neighborhood

CC GO:0005840 ribosome IEP Neighborhood

BP GO:0006412 translation IEP Neighborhood

BP GO:0006457 protein folding IEP Neighborhood

BP GO:0006497 protein lipidation IEP Neighborhood

BP GO:0006505 GPI anchor metabolic process IEP Neighborhood

BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood

BP GO:0006518 peptide metabolic process IEP Neighborhood

BP GO:0006643 membrane lipid metabolic process IEP Neighborhood

BP GO:0006644 phospholipid metabolic process IEP Neighborhood

BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood

BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood

BP GO:0006664 glycolipid metabolic process IEP Neighborhood

BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood

MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Neighborhood

BP GO:0009058 biosynthetic process IEP Neighborhood

BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood

BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood

CC GO:0016272 prefoldin complex IEP Neighborhood

MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood

BP GO:0019538 protein metabolic process IEP Neighborhood

CC GO:0032991 protein-containing complex IEP Neighborhood

BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood

BP GO:0043043 peptide biosynthetic process IEP Neighborhood

CC GO:0043226 organelle IEP Neighborhood

CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood

CC GO:0043229 intracellular organelle IEP Neighborhood

CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood

BP GO:0043603 cellular amide metabolic process IEP Neighborhood

BP GO:0043604 amide biosynthetic process IEP Neighborhood

BP GO:0044249 cellular biosynthetic process IEP Neighborhood

BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood

CC GO:0044424 intracellular part IEP Neighborhood

CC GO:0044444 cytoplasmic part IEP Neighborhood

CC GO:0044464 cell part IEP Neighborhood

BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood

BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood

BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood

BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood

MF GO:0051082 unfolded protein binding IEP Neighborhood

BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood

MF GO:0051751 alpha-1,4-mannosyltransferase activity IEP Neighborhood

MF GO:0070003 threonine-type peptidase activity IEP Neighborhood

BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood

BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood

BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood

BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood

BP GO:1901576 organic substance biosynthetic process IEP Neighborhood

BP GO:1903509 liposaccharide metabolic process IEP Neighborhood

CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

InterPro domains Description Start Stop

IPR005345 PHF5 1 104

External Links

No external refs found!

Type	Description	Actions
Neighborhood	HRR: MA_10433849g0010
Cluster	HCCA: Cluster_268

Target	Alias	Description	ECC score	Gene Family Method
AT1G07170	No alias	PHF5-like protein	0.02	Archaeplastida
Cpa\|evm.model.tig00001187.3	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	Archaeplastida
Cre05.g234648	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	Archaeplastida
LOC_Os04g56760.1	No alias	pre-mRNA splicing factor (PHF5)	0.03	Archaeplastida
LOC_Os05g30410.1	No alias	pre-mRNA splicing factor (PHF5)	0.02	Archaeplastida
Mp8g14050.1	No alias	pre-mRNA splicing factor (PHF5)	0.02	Archaeplastida