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  5. MA_10433886g0010

MA_10433886g0010


Description : cohesin cofactor (PDS5)


Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0001049 (LandPlants) Phylogenetic Tree(s): OG_05_0001049_tree ,
OG_06_0000558 (SeedPlants) Phylogenetic Tree(s): OG_06_0000558_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10433886g0010
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00192140 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.05 Archaeplastida
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.04 Archaeplastida
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.05 Archaeplastida
AT5G47690 No alias binding 0.03 Archaeplastida
GSVIVT01002824001 No alias No description available 0.04 Archaeplastida
GSVIVT01008876001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
Gb_02487 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Gb_09525 No alias cohesin cofactor (PDS5) 0.08 Archaeplastida
Gb_23673 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
LOC_Os04g25960.1 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
Pp3c10_24900V3.1 No alias binding 0.04 Archaeplastida
Pp3c20_23000V3.1 No alias binding 0.04 Archaeplastida
Pp3c23_10270V3.1 No alias binding 0.05 Archaeplastida
Solyc06g065710.3.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Solyc11g012770.2.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Zm00001e015094_P002 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
Zm00001e019139_P001 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
Zm00001e030989_P001 No alias cohesin cofactor (PDS5) 0.05 Archaeplastida
Zm00001e036853_P003 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!