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  5. MA_10434055g0010

MA_10434055g0010


Description : cohesin cofactor (PDS5)


Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0002118 (LandPlants) Phylogenetic Tree(s): OG_05_0002118_tree ,
OG_06_0002144 (SeedPlants) Phylogenetic Tree(s): OG_06_0002144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10434055g0010
Cluster HCCA: Cluster_407

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.02 Archaeplastida
AT1G77600 No alias ARM repeat superfamily protein 0.03 Archaeplastida
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.05 Archaeplastida
AT5G47690 No alias binding 0.05 Archaeplastida
Cre01.g032550 No alias No description available 0.01 Archaeplastida
GSVIVT01002731001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
GSVIVT01002824001 No alias No description available 0.03 Archaeplastida
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
Gb_09525 No alias cohesin cofactor (PDS5) 0.08 Archaeplastida
Gb_23673 No alias cohesin cofactor (PDS5) 0.05 Archaeplastida
LOC_Os04g25960.1 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
LOC_Os06g17840.1 No alias cohesin cofactor (PDS5) 0.06 Archaeplastida
Mp3g13850.1 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
Pp3c10_24900V3.1 No alias binding 0.04 Archaeplastida
Pp3c20_23000V3.1 No alias binding 0.03 Archaeplastida
Pp3c23_10270V3.1 No alias binding 0.04 Archaeplastida
Solyc03g116970.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g012770.2.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Zm00001e015094_P002 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
Zm00001e030989_P001 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Zm00001e036853_P003 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!