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  5. MA_10434208g0010

MA_10434208g0010


Description : APUM23 rRNA biogenesis auxiliary factor


Gene families : OG0003723 (Archaeplastida) Phylogenetic Tree(s): OG0003723_tree ,
OG_05_0004217 (LandPlants) Phylogenetic Tree(s): OG_05_0004217_tree ,
OG_06_0006560 (SeedPlants) Phylogenetic Tree(s): OG_06_0006560_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10434208g0010
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AT1G72320 APUM23, PUM23 pumilio 23 0.04 Archaeplastida
Cre16.g649600 No alias RNA biosynthesis.rRNA biogenesis.APUM23 factor 0.02 Archaeplastida
Gb_27619 No alias APUM23 rRNA biogenesis auxiliary factor 0.02 Archaeplastida
Gb_32744 No alias APUM23 rRNA biogenesis auxiliary factor 0.02 Archaeplastida
Mp4g22460.1 No alias APUM23 rRNA biogenesis auxiliary factor 0.01 Archaeplastida
Solyc03g123640.3.1 No alias APUM23 rRNA biogenesis auxiliary factor 0.03 Archaeplastida
Zm00001e002822_P001 No alias APUM23 rRNA biogenesis auxiliary factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!