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Description : Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica (sp|q5qmn4|rdr4_orysj : 300.0)
Gene families : OG0003779 (Archaeplastida) Phylogenetic Tree(s): OG0003779_tree ,
OG_05_0003228 (LandPlants) Phylogenetic Tree(s): OG_05_0003228_tree ,
OG_06_0004082 (SeedPlants) Phylogenetic Tree(s): OG_06_0004082_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10434272g0010 | |
| Cluster | HCCA: Cluster_192 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00056p00110240 | evm_27.TU.AmTr_v1... | Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| GSVIVT01015313001 | No alias | Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003968 | RNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Neighborhood |
| BP | GO:0006281 | DNA repair | IEP | Neighborhood |
| BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006479 | protein methylation | IEP | Neighborhood |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Neighborhood |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016571 | histone methylation | IEP | Neighborhood |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| BP | GO:0033554 | cellular response to stress | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| MF | GO:0042054 | histone methyltransferase activity | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Neighborhood |
| BP | GO:0051716 | cellular response to stimulus | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007855 | RNA-dep_RNA_pol_euk-typ | 2 | 305 |
| No external refs found! |