AT5G17800 (MYB56, AtMYB56)

Aliases : MYB56, AtMYB56

Description : myb domain protein 56

Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000116 (LandPlants) Phylogenetic Tree(s): OG_05_0000116_tree ,
OG_06_0000572 (SeedPlants) Phylogenetic Tree(s): OG_06_0000572_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G17800
Cluster	HCCA: Cluster_263

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00272410	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
AMTR_s00003p00219710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00006p00225600	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.05	Archaeplastida
AMTR_s00007p00169630	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
AMTR_s00024p00224470	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AMTR_s00032p00057800	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00032p00221670	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00044p00189590	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AMTR_s00079p00140660	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AMTR_s00096p00076220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00105p00029600	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AT1G26780	AtMYB117, LOF1, MYB117	myb domain protein 117	0.03	Archaeplastida
AT1G57560	AtMYB50, MYB50	myb domain protein 50	0.03	Archaeplastida
AT1G66230	AtMYB20, MYB20	myb domain protein 20	0.03	Archaeplastida
AT3G12820	MYB10, AtMYB10	myb domain protein 10	0.03	Archaeplastida
AT3G50060	MYB77	myb domain protein 77	0.03	Archaeplastida
AT4G05100	AtMYB74, MYB74	myb domain protein 74	0.03	Archaeplastida
AT4G13480	AtMYB79, MYB79	myb domain protein 79	0.04	Archaeplastida
AT5G40330	ATMYBRTF, ATMYB23, MYB23	myb domain protein 23	0.02	Archaeplastida
GSVIVT01008005001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01008303001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01012778001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
GSVIVT01015575001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01025034001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01028981001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01029145001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
GSVIVT01034943001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01036712001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01036802001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
Gb_00379	No alias	transcription factor (MYB)	0.04	Archaeplastida
Gb_03227	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_09998	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_11232	No alias	transcription factor (MYB)	0.04	Archaeplastida
Gb_19348	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_22239	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_24073	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_29789	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_33428	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_34882	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_35820	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os01g45090.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os01g52410.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g74590.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os02g09480.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os02g36890.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os02g40530.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os02g54520.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os03g20090.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os07g31470.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os07g44090.3	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os07g48870.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os08g33940.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os09g23620.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os10g33810.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
MA_10157944g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_10217366g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10431212g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_117992g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_121533g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_15502g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_15687g0010	No alias	transcription factor (MYB)	0.04	Archaeplastida
MA_190973g0010	No alias	transcription factor (MYB)	0.04	Archaeplastida
MA_246817g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_437179g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
Mp1g17210.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Mp1g24520.1	No alias	component SNAPC4 of SNAP snRNA transcription factor...	0.02	Archaeplastida
Mp5g14610.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Pp3c14_12390V3.1	No alias	myb domain protein 103	0.02	Archaeplastida
Pp3c15_7790V3.1	No alias	myb domain protein 55	0.02	Archaeplastida
Pp3c1_1650V3.1	No alias	myb domain protein 105	0.02	Archaeplastida
Pp3c1_21610V3.1	No alias	myb domain protein 103	0.04	Archaeplastida
Pp3c25_3170V3.1	No alias	myb domain protein 16	0.03	Archaeplastida
Pp3c6_9970V3.1	No alias	myb domain protein 106	0.02	Archaeplastida
Solyc01g079620.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc01g094360.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc02g079280.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc02g089190.2.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc02g092930.1.1	No alias	transcription factor (MYB)	0.07	Archaeplastida
Solyc03g005570.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc03g093890.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc04g056310.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc04g077260.3.1	No alias	transcription factor (MYB)	0.05	Archaeplastida
Solyc05g007710.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc05g014290.4.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc05g052850.3.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc05g053150.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc07g006750.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc07g054840.4.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc08g076700.1.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc08g076710.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc09g008250.4.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc09g011780.3.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc09g090790.3.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc10g005460.3.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc10g008700.3.1	No alias	No annotation	0.04	Archaeplastida
Solyc12g005640.2.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc12g099130.2.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e001492_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e001803_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e004128_P003	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e004568_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e013910_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e016583_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e020754_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e026250_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e028653_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e029600_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e030961_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e034072_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e035233_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e035619_P002	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e035993_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e040384_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e041239_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e041535_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000103	sulfate assimilation	IEP	Neighborhood
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0004364	glutathione transferase activity	IEP	Neighborhood
MF	GO:0004396	hexokinase activity	IEP	Neighborhood
MF	GO:0004623	phospholipase A2 activity	IEP	Neighborhood
CC	GO:0005615	extracellular space	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0007140	male meiotic nuclear division	IEP	Neighborhood
BP	GO:0007143	female meiotic nuclear division	IEP	Neighborhood
MF	GO:0008022	protein C-terminus binding	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009061	anaerobic respiration	IEP	Neighborhood
BP	GO:0009404	toxin metabolic process	IEP	Neighborhood
BP	GO:0009407	toxin catabolic process	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0009611	response to wounding	IEP	Neighborhood
BP	GO:0009692	ethylene metabolic process	IEP	Neighborhood
BP	GO:0009693	ethylene biosynthetic process	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009751	response to salicylic acid	IEP	Neighborhood
BP	GO:0009873	ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	IEP	Neighborhood
MF	GO:0009973	adenylyl-sulfate reductase activity	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010165	response to X-ray	IEP	Neighborhood
BP	GO:0010200	response to chitin	IEP	Neighborhood
BP	GO:0010243	response to organonitrogen compound	IEP	Neighborhood
BP	GO:0010540	basipetal auxin transport	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0016298	lipase activity	IEP	Neighborhood
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016629	12-oxophytodienoate reductase activity	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
BP	GO:0022622	root system development	IEP	Neighborhood
MF	GO:0022821	potassium ion antiporter activity	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
CC	GO:0031306	intrinsic component of mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0031307	integral component of mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0032592	integral component of mitochondrial membrane	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
MF	GO:0042171	lysophosphatidic acid acyltransferase activity	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0042493	response to drug	IEP	Neighborhood
BP	GO:0043200	response to amino acid	IEP	Neighborhood
BP	GO:0043449	cellular alkene metabolic process	IEP	Neighborhood
BP	GO:0043450	alkene biosynthetic process	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0046677	response to antibiotic	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051865	protein autoubiquitination	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0055081	anion homeostasis	IEP	Neighborhood
BP	GO:0055088	lipid homeostasis	IEP	Neighborhood
BP	GO:0055089	fatty acid homeostasis	IEP	Neighborhood
BP	GO:0055090	acylglycerol homeostasis	IEP	Neighborhood
BP	GO:0055091	phospholipid homeostasis	IEP	Neighborhood
BP	GO:0070328	triglyceride homeostasis	IEP	Neighborhood
MF	GO:0071617	lysophospholipid acyltransferase activity	IEP	Neighborhood
MF	GO:0080043	quercetin 3-O-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0080050	regulation of seed development	IEP	Neighborhood
BP	GO:0090333	regulation of stomatal closure	IEP	Neighborhood
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	Neighborhood
BP	GO:0098754	detoxification	IEP	Neighborhood
BP	GO:0140013	meiotic nuclear division	IEP	Neighborhood
BP	GO:1900673	olefin metabolic process	IEP	Neighborhood
BP	GO:1900674	olefin biosynthetic process	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:2000034	regulation of seed maturation	IEP	Neighborhood
BP	GO:2000693	positive regulation of seed maturation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	93	138
IPR001005	SANT/Myb	145	188

External Links

No external refs found!

AT5G17800 (MYB56, AtMYB56)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation