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  5. MA_10435089g0010

MA_10435089g0010


Description : NUP88 scaffold nucleoporin of nuclear pore complex


Gene families : OG0004418 (Archaeplastida) Phylogenetic Tree(s): OG0004418_tree ,
OG_05_0004603 (LandPlants) Phylogenetic Tree(s): OG_05_0004603_tree ,
OG_06_0007952 (SeedPlants) Phylogenetic Tree(s): OG_06_0007952_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10435089g0010
Cluster HCCA: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g51900.1 No alias NUP88 scaffold nucleoporin of nuclear pore complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR019321 Nucleoporin_Nup88 239 581
No external refs found!