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  5. MA_10435144g0010

MA_10435144g0010


Description : component MED12 of kinase module of MEDIATOR transcription co-activator complex


Gene families : OG0003163 (Archaeplastida) Phylogenetic Tree(s): OG0003163_tree ,
OG_05_0003774 (LandPlants) Phylogenetic Tree(s): OG_05_0003774_tree ,
OG_06_0004441 (SeedPlants) Phylogenetic Tree(s): OG_06_0004441_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10435144g0010
Cluster HCCA: Cluster_491

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00238900 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
AT4G00450 CCT, CRP RNA polymerase II transcription mediators 0.17 Archaeplastida
Cpa|evm.model.tig00000042.125 No alias Mediator of RNA polymerase II transcription subunit 12... 0.02 Archaeplastida
GSVIVT01026933001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.13 Archaeplastida
Gb_27746 No alias Mediator of RNA polymerase II transcription subunit 12... 0.06 Archaeplastida
LOC_Os07g45400.1 No alias component MED12 of kinase module of MEDIATOR... 0.1 Archaeplastida
MA_65214g0010 No alias Mediator of RNA polymerase II transcription subunit 12... 0.1 Archaeplastida
MA_6652855g0010 No alias no hits & (original description: none) 0.13 Archaeplastida
Pp3c24_11620V3.1 No alias RNA polymerase II transcription mediators 0.09 Archaeplastida
Pp3c8_17600V3.1 No alias RNA polymerase II transcription mediators 0.12 Archaeplastida
Smo441953 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.12 Archaeplastida
Solyc01g094620.3.1 No alias component MED12 of kinase module of MEDIATOR... 0.07 Archaeplastida
Zm00001e000051_P004 No alias component MED12 of kinase module of MEDIATOR... 0.07 Archaeplastida
Zm00001e036228_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e039106_P001 No alias component MED12 of kinase module of MEDIATOR... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!