AT1G22500

Description : RING/U-box superfamily protein

Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001529 (LandPlants) Phylogenetic Tree(s): OG_05_0001529_tree ,
OG_06_0000773 (SeedPlants) Phylogenetic Tree(s): OG_06_0000773_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G22500
Cluster	HCCA: Cluster_212

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00267830	evm_27.TU.AmTr_v1...	Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase	0.04	Archaeplastida
AMTR_s00025p00229930	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00056p00122930	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00059p00176670	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AT1G76410	ATL8	RING/U-box superfamily protein	0.06	Archaeplastida
AT2G27940	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT3G03550	No alias	RING/U-box superfamily protein	0.06	Archaeplastida
AT3G18773	No alias	RING/U-box superfamily protein	0.06	Archaeplastida
AT3G60220	ATL4, TL4	TOXICOS EN LEVADURA 4	0.06	Archaeplastida
AT5G06490	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
GSVIVT01000538001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01012015001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
GSVIVT01012020001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01022306001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01026703001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01028038001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.08	Archaeplastida
Gb_04642	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Gb_14762	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Gb_14777	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Gb_14778	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Gb_14788	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Gb_20461	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Gb_41046	No alias	Putative RING-H2 finger protein ATL12 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os01g60730.2	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.06	Archaeplastida
LOC_Os01g64620.1	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os02g15100.1	No alias	RING-H2 finger protein ATL40 OS=Arabidopsis thaliana...	0.05	Archaeplastida
LOC_Os02g15110.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os02g33720.1	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os02g45710.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os02g46100.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g54830.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os03g28080.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os03g44642.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os03g57410.1	No alias	Putative RING-H2 finger protein ATL71 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os04g49000.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os05g40020.1	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os07g48680.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os08g38460.1	No alias	ubiquitin protein ligase (XERICO)	0.02	Archaeplastida
LOC_Os09g30160.1	No alias	ubiquitin protein ligase (XERICO)	0.02	Archaeplastida
LOC_Os10g39936.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10021g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_10244600g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10429091g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_10431161g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_129306g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_152102g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_17249g0010	No alias	Putative RING-H2 finger protein ATL71 OS=Arabidopsis...	0.05	Archaeplastida
MA_189618g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_229590g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_25345g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_280399g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_377006g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_51630g0010	No alias	RING-H2-class E3 ligase	0.08	Archaeplastida
MA_78643g0010	No alias	RING-H2-class E3 ligase	0.1	Archaeplastida
MA_8362328g0010	No alias	Probable E3 ubiquitin-protein ligase XERICO...	0.05	Archaeplastida
Mp1g19680.1	No alias	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Mp2g11860.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Mp4g20140.1	No alias	E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis...	0.01	Archaeplastida
Mp5g08270.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Pp3c20_12240V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c22_15440V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c23_10580V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c24_7770V3.1	No alias	hypoxia-responsive family protein / zinc finger...	0.03	Archaeplastida
Pp3c6_19030V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Smo137213	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.07	Archaeplastida
Smo412609	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Smo423895	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
Smo441685	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
Solyc02g068415.1.1	No alias	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Solyc02g087040.1.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc03g114090.1.1	No alias	RING-H2-class E3 ligase	0.1	Archaeplastida
Solyc04g014220.1.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Solyc05g008640.1.1	No alias	RHA2 signal transducer of abscisic acid perception	0.08	Archaeplastida
Solyc06g049030.4.1	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Solyc09g010650.1.1	No alias	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Solyc11g005310.1.1	No alias	RING-H2-class E3 ligase	0.08	Archaeplastida
Zm00001e010787_P001	No alias	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e014302_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e015477_P001	No alias	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana...	0.08	Archaeplastida
Zm00001e019438_P001	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Zm00001e030136_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e031874_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0007584	response to nutrient	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transport	RCA	Interproscan
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0033273	response to vitamin	None	Extended
BP	GO:0033591	response to L-ascorbic acid	IEP	Interproscan
BP	GO:0034284	response to monosaccharide	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000325	plant-type vacuole	IEP	Neighborhood
BP	GO:0001558	regulation of cell growth	IEP	Neighborhood
BP	GO:0002238	response to molecule of fungal origin	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005372	water transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005773	vacuole	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006816	calcium ion transport	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0006833	water transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0009612	response to mechanical stimulus	IEP	Neighborhood
BP	GO:0009637	response to blue light	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
BP	GO:0010106	cellular response to iron ion starvation	IEP	Neighborhood
BP	GO:0010393	galacturonan metabolic process	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015250	water channel activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
BP	GO:0019722	calcium-mediated signaling	IEP	Neighborhood
BP	GO:0019932	second-messenger-mediated signaling	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030308	negative regulation of cell growth	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0042044	fluid transport	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0045488	pectin metabolic process	IEP	Neighborhood
BP	GO:0045926	negative regulation of growth	IEP	Neighborhood
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Neighborhood
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	Neighborhood
BP	GO:0052546	cell wall pectin metabolic process	IEP	Neighborhood
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	117	160

External Links

No external refs found!

AT1G22500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation