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  5. AT5G18990

AT5G18990


Description : Pectin lyase-like superfamily protein


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0002214 (SeedPlants) Phylogenetic Tree(s): OG_06_0002214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G18990
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G26810 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01013832001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Gb_38324 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os09g39760.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp1g17560.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_23790V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_1680V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo101090 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0009505 plant-type cell wall ISS Interproscan
MF GO:0030599 pectinesterase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Neighborhood
BP GO:0006308 DNA catabolic process IEP Neighborhood
BP GO:0008360 regulation of cell shape IEP Neighborhood
BP GO:0010160 formation of animal organ boundary IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
BP GO:0048437 floral organ development IEP Neighborhood
BP GO:0048440 carpel development IEP Neighborhood
BP GO:0048443 stamen development IEP Neighborhood
BP GO:0048446 petal morphogenesis IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0048859 formation of anatomical boundary IEP Neighborhood
BP GO:0080154 regulation of fertilization IEP Neighborhood
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP Neighborhood
BP GO:2000029 regulation of proanthocyanidin biosynthetic process IEP Neighborhood
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 29 306
No external refs found!