AT5G19030

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0017238 (LandPlants) Phylogenetic Tree(s): OG_05_0017238_tree ,
OG_06_0016737 (SeedPlants) Phylogenetic Tree(s): OG_06_0016737_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G19030
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01016195001	No alias	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01017884001	No alias	No description available	0.03	Archaeplastida
LOC_Os12g31800.1	No alias	RNA editing factor (ORRM)	0.03	Archaeplastida
MA_10428777g0010	No alias	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba...	0.02	Archaeplastida
Mp6g08160.1	No alias	RNA chaperone (RZ1\|GR-RBP)	0.03	Archaeplastida
Solyc07g049270.4.1	No alias	Glycine-rich RNA-binding protein 4, mitochondrial...	0.03	Archaeplastida
Solyc10g083240.2.1	No alias	Small RNA-binding protein 11, chloroplastic...	0.05	Archaeplastida
Zm00001e003316_P001	No alias	RNA chaperone (RZ1\|GR-RBP)	0.03	Archaeplastida
Zm00001e011440_P001	No alias	RNA chaperone (RZ1\|GR-RBP)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003691	double-stranded telomeric DNA binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003713	transcription coactivator activity	IEP	Neighborhood
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	Neighborhood
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Neighborhood
CC	GO:0005874	microtubule	IEP	Neighborhood
CC	GO:0005876	spindle microtubule	IEP	Neighborhood
CC	GO:0005885	Arp2/3 protein complex	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006261	DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	Neighborhood
BP	GO:0007049	cell cycle	IEP	Neighborhood
MF	GO:0008017	microtubule binding	IEP	Neighborhood
CC	GO:0009528	plastid inner membrane	IEP	Neighborhood
BP	GO:0009687	abscisic acid metabolic process	IEP	Neighborhood
BP	GO:0009688	abscisic acid biosynthetic process	IEP	Neighborhood
CC	GO:0009706	chloroplast inner membrane	IEP	Neighborhood
BP	GO:0010020	chloroplast fission	IEP	Neighborhood
BP	GO:0010090	trichome morphogenesis	IEP	Neighborhood
MF	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016444	somatic cell DNA recombination	IEP	Neighborhood
MF	GO:0042162	telomeric DNA binding	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Neighborhood
BP	GO:0043288	apocarotenoid metabolic process	IEP	Neighborhood
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	Neighborhood
BP	GO:0043572	plastid fission	IEP	Neighborhood
BP	GO:0043903	regulation of symbiosis, encompassing mutualism through parasitism	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
BP	GO:0045003	double-strand break repair via synthesis-dependent strand annealing	IEP	Neighborhood
BP	GO:0048366	leaf development	IEP	Neighborhood
BP	GO:0048827	phyllome development	IEP	Neighborhood
BP	GO:0050792	regulation of viral process	IEP	Neighborhood
MF	GO:0051011	microtubule minus-end binding	IEP	Neighborhood
MF	GO:0051117	ATPase binding	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
MF	GO:0097472	cyclin-dependent protein kinase activity	IEP	Neighborhood
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	Neighborhood
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Neighborhood
BP	GO:1902644	tertiary alcohol metabolic process	IEP	Neighborhood
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	79	148

External Links

No external refs found!

AT5G19030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation